Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3800g00038 ATGGCGAGTCACCCTTCCGAGGCTCCCGCCGATGACTTCCTCGAGCAAATCCTCGGCCTCTCGACTTTCGCTTCCGCCGACTCCGCCTTGGCCGGAACCGATGCTTCTTCGTTGGCGGCTCCGCCTCCGATGATGCTGCAGCTTAACTCCGGCGACCCCGCCGCCTCCAGCCACCTCGGCGCCGGAAGTGGATTCCATGCACCGGTGTACCAGTTGGGGCTGAGTTTGGAGCAAGGTAAAGGAGGGTTCTTGAAGCCCGACGATGCTTCCGGGAGTGGCAAGCGCTTCCGCGAGGACGCTGTTGATGGCAGAGCTAAGAATGTTTTTCATGGGCAACCCATGCCTAATACCATTCCTAACGCACCACATCCACCAACAATGCGTCCTAGAGTGCGGGCTAGAAGAGGACAGGCTACAGATCCACACAGCATAGCTGAAAGGTTGCGCAGAGAGAGAATAGCCGAAAGAATCAGGGCTTTGCAAGAACTGGTTCCTAGTGTCAACAAGTCAGATAGAGCTGCCATGCTGGATGAAATTGTGGATTACGTCAAGTTCTTAAGGCTTCAAGTGAAGGTTTTGAGCATGAGTAGATTGGGAGGAGCTGGTGCAGTGGCACCACTGGTAACTGACATCCCATTATCATCAGTTGAGGTAATTATTCTAACTAATGTGTATATTGATCAGGAAGAAGGAAGTGAGGGTGGAAGAAACCAACCAGCTTGGGAGAAGTGGTCAAATGATGGGACAGAAAGGCAGGTAGCTAAGCTAATGGAAGAAAATGTTGGGGCTGCCATGCAGTTTCTTCAATCAAAGGCACTCTGCATCATGCCCATTTCACTGGCGTCAGCAATATACCAGTCACAACCATCAGACACCTCTAGCATAGTTAAGCCTGAAACTAATCCTCCTTCATAG 915 0.5169 MASHPSEAPADDFLEQILGLSTFASADSALAGTDASSLAAPPPMMLQLNSGDPAASSHLGAGSGFHAPVYQLGLSLEQGKGGFLKPDDASGSGKRFREDAVDGRAKNVFHGQPMPNTIPNAPHPPTMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKSDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEVIILTNVYIDQEEGSEGGRNQPAWEKWSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYQSQPSDTSSIVKPETNPPS 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3800g00038 304 FunFam Basic helix-loop-helix transcription factor 132 194 - -
Gabi3800g00038 304 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 135 196 IPR036638 GO:0046983
Gabi3800g00038 304 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 59 283 - -
Gabi3800g00038 304 SMART finulus 143 192 IPR011598 GO:0046983
Gabi3800g00038 304 Pfam Helix-loop-helix DNA-binding domain 142 186 IPR011598 GO:0046983
Gabi3800g00038 304 Gene3D - 132 194 IPR036638 GO:0046983
Gabi3800g00038 304 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 137 186 IPR011598 GO:0046983
Gabi3800g00038 304 MobiDBLite consensus disorder prediction 107 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3800g00038 Gabi-Chr3800 406773 411979 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3800g00038 65 303 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 76.735 1.02e-116 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi3800g00038 HLH 3.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3800g00038 - - ccaj:109808880 476.092