Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3800g00028 ATGAATCATCTACCATCAAACCTCTTGCCCAATGAAGCAAACCCCGAGTGGATGAACAAGGGTGACAACACGTGGCAGCTAACAGCAGCTACTCTGGTGGGGCTGCAAAGTGTTCCGGGGCTTGTAATCCTCTATGGCAGCATAGTGAAGAAGAAATGGGCATTGAACTCAGCATTCATGGCCCTTTATGCATTTGCAGCGGTTCTGGTTTGTTGGATAGGTTGGTGCTATCAAATGTCTTTTGGTGAGAGGATCTTTCCATTCTTGGGACGTCCAAACATGGTCTTGGAAGAGAAATTCCTTCTGCGCCAAGCTTTTGCAGGGAACTTTCCAAATGCCACCATGGTGTACTTCCAATTGGTTTTTGCTGCCATCACGTTGATTCTCATAGCTGGGGCTTTGCTAGGGAGAATGAACTTTCATGCATGGATGTTGTTTGTTCCACTTTGGGTCACTTTCTCTTACACAATATGTGCATTCAGTATTTGGAGCAAAGATGGATGGTTATTCAAGATGGGTCTCATTGATTATTCTGGTGGCTTTGTTATTCACCTTTCTTCTGGGATTGCTGGTTTCACCGCAGCATGCTGGGTGGGACCAAGGGCAATAAAGGATAGAGAGAGGTTCCCTCCAAACAACATACTTCTAATGCTGCTTGGGGCTGGCCTACTATGGATGGGATGGACTGGATTCAACGGTGGAGATCCTTACACAGTCAGCATAGATGCATCTCTAGCCGTCCTTAACACCCACGTATGCACTGCCATGAGCTTGCTGACTTGGCTTTTCCTTGACATCCTCTTTTTTGGAAAGCCTTCTGTGATTGGTGCCACTCAGGGCATGATCACTGGCTTGGTTTGCATCACCCCTGCTGCCGGTGTGGTGCAAGGCTGGGCAGCAATCTTAATGGGAATGTTATCTGGAAGCATACCATGGTACACAATGATGGTCCTGCACAAAGAAATTAGGCTCCTCAAACAGGTGGATGATACCATGGCAATTTTCCACACCCATGCAGTGGCTGGTTGCTTAGGTGGCATTCTTGCTGGCTTCTTTGCAGACCCTAAGCTTTGTCGTCTCTTCTATCAGGTACCTGATTGGGAGCACTATACGGGACTTGCTTATGGCATCCTTACAGGGAGGGCCAAGGCAGGGTTCAAGCAAATGGGGGTTCAGCTCCTTGGCATTGTGTTTGTGATATTGCTCAATGTCACCACAACTACCATTGTTTGTTTGTTGGTTAGGATTGTTGTCCCACTGAGGCTTCCTGAAGATGACTTGCAAATTGGGGATGATGCTGTTCATGGTGAAGTTGCCTATGCATTGTGGGGTGATGGAGAGAAACTTGAGACTGCCAATGAGACTTTGGCTTTTGAAAGGAATTATGAATGGCCAATTGTAAAGAGTTCGAGTGAAGTTCAATTGGAATGA 1431 0.4675 MNHLPSNLLPNEANPEWMNKGDNTWQLTAATLVGLQSVPGLVILYGSIVKKKWALNSAFMALYAFAAVLVCWIGWCYQMSFGERIFPFLGRPNMVLEEKFLLRQAFAGNFPNATMVYFQLVFAAITLILIAGALLGRMNFHAWMLFVPLWVTFSYTICAFSIWSKDGWLFKMGLIDYSGGFVIHLSSGIAGFTAACWVGPRAIKDRERFPPNNILLMLLGAGLLWMGWTGFNGGDPYTVSIDASLAVLNTHVCTAMSLLTWLFLDILFFGKPSVIGATQGMITGLVCITPAAGVVQGWAAILMGMLSGSIPWYTMMVLHKEIRLLKQVDDTMAIFHTHAVAGCLGGILAGFFADPKLCRLFYQVPDWEHYTGLAYGILTGRAKAGFKQMGVQLLGIVFVILLNVTTTTIVCLLVRIVVPLRLPEDDLQIGDDAVHGEVAYALWGDGEKLETANETLAFERNYEWPIVKSSSEVQLE 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3800g00028 476 Gene3D Ammonium transporter AmtB like domains 7 443 IPR029020 -
Gabi3800g00028 476 PRINTS Rhesus blood group protein signature 119 135 IPR002229 GO:0005886
Gabi3800g00028 476 PRINTS Rhesus blood group protein signature 215 233 IPR002229 GO:0005886
Gabi3800g00028 476 PRINTS Rhesus blood group protein signature 246 268 IPR002229 GO:0005886
Gabi3800g00028 476 NCBIfam ammonium transporter 22 440 IPR001905 GO:0008519|GO:0016020|GO:0072488
Gabi3800g00028 476 Pfam Ammonium Transporter Family 25 440 IPR024041 GO:0008519|GO:0016020|GO:0072488
Gabi3800g00028 476 FunFam Ammonium transporter 7 443 - -
Gabi3800g00028 476 PANTHER AMMONIUM TRANSPORTER MEP2 6 451 IPR001905 GO:0008519|GO:0016020|GO:0072488
Gabi3800g00028 476 SUPERFAMILY Ammonium transporter 17 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3800g00028 Gabi-Chr3800 270661 272578 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3800g00028 113 463 Inorganic Solute Cotransporters AT2G38290 59.259 5.65e-142 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3800g00028 K03320 - gmx:112999382 820.076