Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3800g00017 ATGTTCCCTGCAGTTATGTCCAATTCCACTTCTTTGTCGACCGAAGAAGCCAGTGTCTCTTGTGGTACAAGAATTCACGACTTGTGTGGACTCAATCATGTTGTCTCAACCATTAATTCTCCACAGCAACCTCAAAAGATCAAGAAAAAGAGAAGCCTCCCTGGAAATCCAGACCCAGATGCTGAAGTGATTGCTTTATCCCCCAAGACCCTTCTAGCTACCAATAGGTTTGTGTGTGAGATCTGCAACAAGGGTTTCCAGAGAGATCAGAACCTTCAGCTTCATAGGAGAGGCCATAACCTGCCATGGAAGCTGAAGCAAAGGAACAACAAAGAGGTCAAAAAGAGAGCCTACGTTTGCCCAGAGCCTTCATGTGTTCACCATAACCCTTCAAGGGCTCTTGGGGATCTTACAGGAATTAAGAAACACTACTGCAGAAAACATGGAGAGAAGAAGTGGAAATGTGACAAGTGCTCAAAGATCTATGCTGTTCAGTCAGATTGGAAAGCTCACTCTAAAACCTGTGGTACTAGAGAATATAGATGTGATTGTGGAACCCTTTTTTCCAGGAAGGATAGCTTCATAACTCATAGAGCATTCTGTGATGCATTGGCTGAAGAAAGTGCAAGAATTTCAGCAAACCAAATAGCCACAAACACAAACCCATTAATCCATTCTCTCTTTCTTCTCCCAAACCAACAACAACATAACTTCCAAAACCAGATCATGGCCAACATCAATACATGGGACCCATCTCAAGAAAACCCTAACCCTAGCAATCTTGTTGCTGTTTCTGCTAGTGCTCTCCACAACAACATCAAATATGAAGCTCAAAACTTTCAGATACCCAACAACCTCTCTTCTCCTCCTCCTCCTCCATTTCTTCGGCACTCCAACAAGAGCATGATAACCTCACCTTTCGGTGACCTCCATGTCCGCATGCAACCCTACTCCAACGCCGCCACGTTACCACACCTCTCAGCCACTGCACTTCTCCAGAAGGCTTCGACCGTTGGTGCCGCCACCATCACTGGCCCTGCTTCTGCTGTTTCCATTGGACAACAACAGCAACATTCTCAGCAGCAGTCACTGAGTCGCGTGACTCAGCTCAGCATGGGCGAGTTTGGAACAGTGACTCACCTCGACTCGGTGGTACCCAATCACTACATGAACATGAGAGGCCTCACCCCCGCCGCCGCCGCCACCACCATCACCACCGCCCGTAACCTCAAAAACGACCATCTCACGAGGGATTTCCTAGGCCTGACCGGGGACGCCGCCAACGGCGGAGGAAATAGCGGCGCGGTTGACGTTAGCATTAACGTTAAGGATATGCTAACATTCACGGGGAGCGTAGAATACCACCACCAACAACAACAGCAACAACTCCAACCTTACGAGCACCATAACAACTCGGTTTTCAAGTCCCAACAAGGTTTTGGATTCCTTGGGACAACCACTGCCCCTGAGTCATGGGGGAATTGTTGA 1488 0.4798 MFPAVMSNSTSLSTEEASVSCGTRIHDLCGLNHVVSTINSPQQPQKIKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNNKEVKKRAYVCPEPSCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCDKCSKIYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARISANQIATNTNPLIHSLFLLPNQQQHNFQNQIMANINTWDPSQENPNPSNLVAVSASALHNNIKYEAQNFQIPNNLSSPPPPPFLRHSNKSMITSPFGDLHVRMQPYSNAATLPHLSATALLQKASTVGAATITGPASAVSIGQQQQHSQQQSLSRVTQLSMGEFGTVTHLDSVVPNHYMNMRGLTPAAAATTITTARNLKNDHLTRDFLGLTGDAANGGGNSGAVDVSINVKDMLTFTGSVEYHHQQQQQQLQPYEHHNNSVFKSQQGFGFLGTTTAPESWGNC 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3800g00017 495 ProSitePatterns Zinc finger C2H2 type domain signature. 79 99 IPR013087 -
Gabi3800g00017 495 Gene3D Classic Zinc Finger 146 210 - -
Gabi3800g00017 495 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 40 455 IPR031140 -
Gabi3800g00017 495 Pfam Zinc finger, C2H2 type 77 99 IPR013087 -
Gabi3800g00017 495 FunFam protein indeterminate-domain 12-like 56 124 - -
Gabi3800g00017 495 SMART c2h2final6 118 148 IPR013087 -
Gabi3800g00017 495 SMART c2h2final6 153 173 IPR013087 -
Gabi3800g00017 495 SMART c2h2final6 77 99 IPR013087 -
Gabi3800g00017 495 Gene3D Classic Zinc Finger 56 125 - -
Gabi3800g00017 495 FunFam protein indeterminate-domain 5, chloroplastic-like 131 210 - -
Gabi3800g00017 495 SUPERFAMILY beta-beta-alpha zinc fingers 76 173 IPR036236 -
Gabi3800g00017 495 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 99 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3800g00017 Gabi-Chr3800 145722 149348 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3800g00017 16 484 IDZ Gene Family AT4G02670 46.541 7.02e-127 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi3800g00017 zf-C2H2 0.005 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3800g00017 K25870 - gmx:100780056 652.514