Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3800g00016 ATGAATTATATGTACTCAGTGAAAGAAGAATACTTAGAACCACCACCACCACCACCATCATCATCATTTCAATCAGGAGGTGAATTCCCACCAATGATTCCACCACCCCAGCCAATGGTGGGGCTTCATGACATAGGACCCCCTCCATTCCTCACCAAAACTTTTGATGTGGTGGACGACCCAACAACCAATCACGTGGTTTCATGGAGCAGAGGTGGCACCAGCTTTGTGGTTTGGGATCCACATGCCTTCTCCTTAGATCTTTTACCCAGATACTTCAAGCACAACAATTTCTCGAGCTTTGTTAGACAACTAAACACTTATGGTTTTAGAAAAATTGATCCAGATAGATGGGAGTTTGCAAATGAAGGGTTCCTCAAAGGGCACAGGCACCTATTGAGGAACATAAGGAGAAGGAAAGCACCTTCCCAGCCTAACCCTTCCCAACAAGTACAAAATCACTGTGTTCAAGTTGGCCGTTTAGGACTTGATGAAGAGATTGATCGTTTGAGGCACGACAAGCGGTTGTTAATGTTGGAGCTTGTGAATCTTAAACAGAAGCAACAGAATACCAGAATGTGCCTTGAAGAGATGGAGCAAAGGTTACAAGGGACAGAAATCAAGCAGCAACAAATGATGGCATTCTTAGCTAGAGCTATGAAAAACCCTGCCTTTGTTCAGCAACTACTCCAACAGAAAGAGAAGAGAGAGGAGCTTGAAGAAGCCATGACCAAAAAGAGGAGAAGGCAAATTGAGCTAGGAGGTATTGGAGAATCAAGCAGGGGTGGTGAAGGAAGGAGCACCGTTAAAGTTGAGCCCTTAGAATTTTGGGATTGTGAGTTTGGAGTGTCAGAGTTGGAAGTGCTAGCTATGGAAATGCAGGGTTTTGGAAGGGGGAGTAGAGAGGAGGAGGAAGGACTGGAGGTACTAGAACCACAAGAGAGGCTGGACAGAGAACTTGATGAAGAGTTCTGGGAAGAATTACTGTTTAGTGAGAAATTTGAGGGTCAATTTGACATTGACATTCCAACTACTGAAAATGAAGATGAATATGAAGATATCAATGTATTGGACAATGGCTTTGGCTGCTTGCATTCAAGTCATTAA 1107 0.4372 MNYMYSVKEEYLEPPPPPPSSSFQSGGEFPPMIPPPQPMVGLHDIGPPPFLTKTFDVVDDPTTNHVVSWSRGGTSFVVWDPHAFSLDLLPRYFKHNNFSSFVRQLNTYGFRKIDPDRWEFANEGFLKGHRHLLRNIRRRKAPSQPNPSQQVQNHCVQVGRLGLDEEIDRLRHDKRLLMLELVNLKQKQQNTRMCLEEMEQRLQGTEIKQQQMMAFLARAMKNPAFVQQLLQQKEKREELEEAMTKKRRRQIELGGIGESSRGGEGRSTVKVEPLEFWDCEFGVSELEVLAMEMQGFGRGSREEEEGLEVLEPQERLDRELDEEFWEELLFSEKFEGQFDIDIPTTENEDEYEDINVLDNGFGCLHSSH 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3800g00016 368 ProSitePatterns HSF-type DNA-binding domain signature. 89 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi3800g00016 368 MobiDBLite consensus disorder prediction 11 30 - -
Gabi3800g00016 368 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 36 265 IPR027725 -
Gabi3800g00016 368 Coils Coil 167 201 - -
Gabi3800g00016 368 Pfam HSF-type DNA-binding 50 139 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi3800g00016 368 MobiDBLite consensus disorder prediction 10 30 - -
Gabi3800g00016 368 SMART hsfneu3 46 139 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi3800g00016 368 SUPERFAMILY "Winged helix" DNA-binding domain 46 139 IPR036390 -
Gabi3800g00016 368 Gene3D - 43 140 IPR036388 -
Gabi3800g00016 368 PRINTS Heat shock factor (HSF) domain signature 50 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi3800g00016 368 PRINTS Heat shock factor (HSF) domain signature 88 100 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi3800g00016 368 PRINTS Heat shock factor (HSF) domain signature 101 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi3800g00016 368 FunFam Heat shock transcription factor 1 43 140 - -
Gabi3800g00016 368 Coils Coil 229 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3800g00016 Gabi-Chr3800 126878 129265 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3800g00016 30 367 HSF AT3G22830 50.000 2.58e-114 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gabi3800g00016 HSF_DNA-bind 1.5e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3800g00016 K09419 - gmx:100794264 449.899