Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3800g00012 ATGATTCAGTACCTATTATTCGCATTAGGGTTTCTGCTTTCTGCAACAATCCCCTTTTCTCGCGGGGAATCATCTACCTGCTTGACGGTCTACAAGAACGGCGGTGCTCCGGCCGTGTTCCAATCCCCAAAATGCCCTCGCTGGAAGCTCACCGATTACGATTCTCCTCCCCAAACCACCGCGCGTTGTCAGTCCGCGATGCTCCAGGGCCGTAGAAATTCCCAAGAGGATCGCACTCTCTGCGTCCTTGATGTTCGAATTCCCTTCCCTGATGCGTTCGGGATCAAGGAGGTTGCGGTTGGGATTGTGGCTGTTTTCGATGGTCATAACGGTGCAGAAGCTAGTGAGATGGCGTCAAAACTTTTGGTGGAGTATTTCGTTTTGCATACTTATTTTCTTCTTGATGCCGCGTATTCTGTTATATCCAAGGCGTCTACAGGAACATTGCTTCACAAGAGAGATCGTGATCGTGTAAACCTACTGCATAGATGGAAAGAAATTCTTGGTTGGCAATGGCATGAAAAGGATTTCGAAAGGTTTCAGAATACATTTTCTGCAAATTTTGATGATTCTTTGCACTTGGAAATTTTGAAGGAAGCATTGTTGAGAGCAATTCATGATATTGATGCAAAATTTTCTGAGGAAGCCAACAAAAATAGTCTTCATTCAGGATCTACGGCAACCATTGTATTGGTTGCAGATGATAAAATTTTGGTTGCCAATATTGGAGACTCTAAGGCCTTCTTATGTTCTGAAAAATTTCAGTCTCCTAGAGAGGCTAAAGCCTCATTATTAAAGCTATATAGGCAGAAAGAGCATGATGGTTCTGTTTCCGTATGGGATCGTGAAAAGTACAGATTGGCTTCCTCTCATGGACTCACTCATTTTGCAGTAAAGGAATTGACCAGTGATCATCATCCAGACAGAGATGATGAAAGAATTAGGGTGGAAACAGCTGGTGGTCAAGTTCTAAATTGGGGTGGTGTGCCTCGCATAAATGGTCAGCTGGCTATTACACGGGCTATTGGTGATGTATTCTTTAAAAGTTATGGTGTTATATCTGCACCAGAAGTGACTGATTGGCAGCCTCTGACTGCCAATGATAGCTATTTGGTGGCTGCATCTGATGGTGTATTTGAGAAAATGAACATGCAGGATGTCTGTGACTTGTTGTGGGAAGTACACTGTTTCAGTAACATGAGATCAGAGTGTACCTGTTCATCTTCCTATTCATTGGCAGATTTTATTGTTAACACTTCCTTCACAAAGGGCAGTATGGACAATGTGGCAGCAGTTGTTGTTCCTCTGGAATCTTCCAAATCTTCTGTAAACACGCTTAGGAGAGGCTATGTTGAAAATAGGGATGCAGGCTTCCCATTATTTGGTCCACAGGAACCTGCTTCCAGAAGCTCAGCTAAAGACATCACATCTGTTCTAATGCATTTGGAGCATCCTCATCTGGTAGATACCAAGTTTAAGCGAATATTGGTTGAAGTGAAACATGGTGATTTTGGATGTTTTTATTTATCTGAAAATCTTGATGAACCAGTGGACTCTAAGCAGCCTGCTAAAAAAACTGACTGGGAAGACTATCTGTATGAACTACCTCAGCCTCTACCAGACGCCCTTCATCAACATGTTGTAGGTGGTCCTGTAAATTTGTACAATGAACATAACTTTTGCTTTAACCTTGGTCCGATTGTCAATGAAGCCAAAGACCAATGCATAAATCCTGAAGGCTTTGCTAGTTTTATGGGTCTTCTTGAATCGATTCCTTTACATGATACTGGTTCAAATAATGGGTCTTCTGATTATTCATTTCCTGATTTGAGGTATGTGTTAAAGAAGAGTTTTGGTCGTGGATCATATGGTGAAGTATGGTTAGCTTTCCATTGGAATTGTAATCAAGGAAGTAATGCCACAAACATGAGCAAGGATGACAATGTTAGAAACAGCAGCTCAACTACTCCCGATTGTCAGGATGGTCCTTCTAACTACACATTGTACATTTTGAAACGTATAATGGTAGAGAGAGGGTCTGCTGTTTACTTAAGCGGGCTGAGGGAGAAGTATTTTGGAGAAATTTTCTTAAACGCCTCTATATGTGTTGAAGATCTGCTATCAGCTGCAAAATCAAACTGTGTCTTGGAAACTTCACAATTTGGTTCATTTCCAAACAAATTTAGGCTGCAAAGAGCCATGTATGAAGAAGGTTTGAACCATATTGCAAGATATGTGGAGTCTTTTGAGTCTCGATCCAATGAAATATGGCTTGTATTCAGTTATGAAGGCATGTCATTGTCTAAACTTTTATATACTGTGGAAGATGCATATGATACTGCTGAGAAAGAAAGATTTGAGCAAGTAAAACATGCTCAGATACTACGTCCATCAAAGTGGTGGCATTGGTTGAAAACTACAGAAGAAGGGCAAGAGGAAATGCGCAACCTTCTCTGGCAGTTGTTATTGGCTCTCAAGTCCTGTCACGATCGCAATATCACACACAGGGACATTAAACCTGAGAACATGGTGATATGCTTTGAAGATCAGGAGACGGGGAGATGCTTGAAAGAGATTCCAGCTAAAATCAATAAATTTTCCACCAAAATGCGTATTATCGATTTTGGAAGTGGAATTGATGAATTCACATTAAAGCATTTATATGGTTCTGCTGGGCCTTCTAGAGCTGAACAAACTTATGAATATACACCTCCTGAAGCTCTGCTAAATGCTAAGTGGTATCAAGGACCAACAAGCTCAACCTTGAAATATGACATGTGGAGCGTTGGTATTGTAATGTTAGAGTTGGTCTTAGGGACACCAAATGTTTTCCAGATAAATGCTTTAACACGTGCTCTTTTGGACCGGCATCTTGAGGGCTGGAATGACGGTGTGAAGCAGCTGGCATACAAACTTAGATCATTCATGGAATTGTGCATCTTAATCCCTGGGATTTCCGGCAGTTCCTCAAAAAAGTATCACACAGTGAACCAAGTTGGAGTTTCGCCTGCATCCTGGAAATGCTCTGAAGAATTCTTTTCTCGTCAAATTAAGAATCGAGATCCTCTGAAAATAGGTTTTTCAAACATCTGGGCTTTACGGTTAGTGCGCCATCTGTTACTCTGGGACCCAGAGGATCGTCCAAGTGTTGATGAGGCACTGCAGCATCCCTATTTCCAACCTCCCCCAAGAGGATGA 3198 0.4174 MIQYLLFALGFLLSATIPFSRGESSTCLTVYKNGGAPAVFQSPKCPRWKLTDYDSPPQTTARCQSAMLQGRRNSQEDRTLCVLDVRIPFPDAFGIKEVAVGIVAVFDGHNGAEASEMASKLLVEYFVLHTYFLLDAAYSVISKASTGTLLHKRDRDRVNLLHRWKEILGWQWHEKDFERFQNTFSANFDDSLHLEILKEALLRAIHDIDAKFSEEANKNSLHSGSTATIVLVADDKILVANIGDSKAFLCSEKFQSPREAKASLLKLYRQKEHDGSVSVWDREKYRLASSHGLTHFAVKELTSDHHPDRDDERIRVETAGGQVLNWGGVPRINGQLAITRAIGDVFFKSYGVISAPEVTDWQPLTANDSYLVAASDGVFEKMNMQDVCDLLWEVHCFSNMRSECTCSSSYSLADFIVNTSFTKGSMDNVAAVVVPLESSKSSVNTLRRGYVENRDAGFPLFGPQEPASRSSAKDITSVLMHLEHPHLVDTKFKRILVEVKHGDFGCFYLSENLDEPVDSKQPAKKTDWEDYLYELPQPLPDALHQHVVGGPVNLYNEHNFCFNLGPIVNEAKDQCINPEGFASFMGLLESIPLHDTGSNNGSSDYSFPDLRYVLKKSFGRGSYGEVWLAFHWNCNQGSNATNMSKDDNVRNSSSTTPDCQDGPSNYTLYILKRIMVERGSAVYLSGLREKYFGEIFLNASICVEDLLSAAKSNCVLETSQFGSFPNKFRLQRAMYEEGLNHIARYVESFESRSNEIWLVFSYEGMSLSKLLYTVEDAYDTAEKERFEQVKHAQILRPSKWWHWLKTTEEGQEEMRNLLWQLLLALKSCHDRNITHRDIKPENMVICFEDQETGRCLKEIPAKINKFSTKMRIIDFGSGIDEFTLKHLYGSAGPSRAEQTYEYTPPEALLNAKWYQGPTSSTLKYDMWSVGIVMLELVLGTPNVFQINALTRALLDRHLEGWNDGVKQLAYKLRSFMELCILIPGISGSSSKKYHTVNQVGVSPASWKCSEEFFSRQIKNRDPLKIGFSNIWALRLVRHLLLWDPEDRPSVDEALQHPYFQPPPRG 1065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3800g00012 1065 Gene3D - 58 444 IPR036457 -
Gabi3800g00012 1065 SUPERFAMILY PP2C-like 60 437 IPR036457 -
Gabi3800g00012 1065 SMART PP2C_4 54 434 IPR001932 -
Gabi3800g00012 1065 ProSiteProfiles PPM-type phosphatase domain profile. 62 436 IPR001932 -
Gabi3800g00012 1065 ProSiteProfiles Protein kinase domain profile. 612 1059 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3800g00012 1065 Pfam Protein kinase domain 807 1059 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3800g00012 1065 Gene3D Transferase(Phosphotransferase) domain 1 799 1060 - -
Gabi3800g00012 1065 SUPERFAMILY Protein kinase-like (PK-like) 611 1061 IPR011009 -
Gabi3800g00012 1065 SMART serkin_6 612 1059 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3800g00012 1065 CDD PP2Cc 69 436 IPR001932 -
Gabi3800g00012 1065 Pfam Protein phosphatase 2C 186 391 IPR001932 -
Gabi3800g00012 1065 FunFam uncharacterized protein LOC106771884 isoform X8 799 1060 - -
Gabi3800g00012 1065 PANTHER PROTEIN PHOSPHATASE 57 435 IPR015655 GO:0004722|GO:0006470
Gabi3800g00012 1065 ProSitePatterns Serine/Threonine protein kinases active-site signature. 833 845 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3800g00012 Gabi-Chr3800 86194 110391 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3800g00012 676 1063 PP2C-type Phosphatase Gene Family AT3G63340 65.561 1.94e-179 526
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSKL Gabi3800g00012 Pkinase 1.3e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3800g00012 - - gmx:100781476 1902.49