Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3800g00011 ATGATTCAGTACCTATTATTCGCATTAGGGTTTCTGCTTTCTGCAACAATCCCCTTTTCTCGCGGGGAATCATCTACCTGCTTGACGGTCTACAAGAACGGCGGTGCTCCGGCCGTGTTCCAATCCCCAAAATGCCCTCGCTGGAAGCTCACCGATTACGATTCTCCTCCCCAAACCACCGCGCGTTGTCAGTCCGCGATGCTCCAGGGCCGTAGAAATTCCCAAGAGGATCGCACTCTCTGCGTCCTTGATGTTCGAATTCCCTTCCCTGATGCGTTCGGGATCAAGGAGGTTGCGGTTGGGATTGTGGCTGTTTTCGATGGTCATAACGGTGCAGAAGCTAGTGAGATGGCGTCAAAACTTTTGGTGGAGTATTTCGTTTTGCATACTTATTTTCTTCTTGATGCCGCGTATTCTGTTATATCCAAGGCGTCTACAGGAACATTGCTTCACAAGAGAGATCGTGATCGTGTAAACCTACTGCATAGATGGAAAGAAATTCTTGGTTGGCAATGGCATGAAAAGGATTTCGAAAGGTTTCAGAATACATTTTCTGCAAATTTTGATGATTCTTTGCACTTGGAAATTTTGAAGGAAGCATTGTTGAGAGCAATTCATGATATTGATGCAAAATTTTCTGAGGAAGCCAACAAAAATAGTCTTCATTCAGGATCTACGGCAACCATTGTATTGGTTGCAGATGATAAAATTTTGGTTGCCAATATTGGAGACTCTAAGGCCTTCTTATGTTCTGAAAAATTTCAGTCTCCTAGAGAGGCTAAAGTAAAGGAATTGACCAGTGATCATCATCCAGACAGAGATGATGAAAGAATTAGGGTGGAAACAGCTGGTGGTCAAGTTCTAAATTGGGGTGGTGTGCCTCGCATAAATGGTCAGCTGGCTATTACACGGGCTATTGGTGATGTATTCTTTAAAAGTTATGGTGTTATATCTGCACCAGAAGTGACTGATTGGCAGCCTCTGACTGCCAATGATAGCTATTTGGTGGCTGCATCTGATGGTGTATTTGAGAAAATGAACATGCAGGATGTCTGTGACTTGTTGTGGGAAGTACACTGTTTCAGTAACATGAGATCAGAGTGTACCTGTTCATCTTCCTATTCATTGGCAGATTTTATTGTTAACACTTCCTTCACAAAGGGCAGTATGGACAATGTGGCAGCAGTTGTTGTTCCTCTGGAATCTTCCAAATCTTCTGTAAACACGCTTAGGAGAGGCTATGTTGAAAATAGGGATGCAGGCTTCCCATTATTTGGTCCACAGGAACCTGCTTCCAGAAGCTCAGCTAAAGACATCACATCTGTTCTAATGCATTTGGAGCATCCTCATCTGGTAGATACCAAGTTTAAGCGAATATTGGTTGAAGTGAAACATGGTGATTTTGGATGTTTTTATTTATCTGAAAATCTTGATGAACCAGTGGACTCTAAGCAGCCTGCTAAAAAAACTGACTGGGAAGACTATCTGTATGAACTACCTCAGCCTCTACCAGACGCCCTTCATCAACATGTTGCAGTAGGTGGTCCTGTAAATTTGTACAATGAACATAACTTTTGCTTTAACCTTGGTCCGATTGTCAATGAAGCCAAAGACCAATGCATAAATCCTGAAGGCTTTGCTAGTTTTATGGGTCTTCTTGAATCGATTCCTTTACATGATACTGGTTCAAATAATGGGTCTTCTGATTATTCATTTCCTGATTTGAGGTATGTGTTAAAGAAGAGTTTTGGTCGTGGATCATATGGTGAAGTATGGTTAGCTTTCCATTGGAATTGTAATCAAGGAAGTAATGCCACAAACATGAGCAAGGATGACAATGTTAGAAACAGCAGCTCAACTACTCCCGATTGTCAGGATGGTCCTTCTAACTACACATTGTACATTTTGAAACGTATAATGGTAGAGAGAGGGTCTGCTGTTTACTTAAGCGGGCTGAGGGAGAAGTATTTTGGAGAAATTTTCTTAAACGCCTCTATATGTGTTGAAGATCTGCTATCAGCTGCAAAATCAAACTGTGTCTTGGAAACTTCACAATTTGGTTCATTTCCAAACAAATTTAGGCTGCAAAGAGCCATGTATGAAGAAGGTTTGAACCATATTGCAAGATATGTGGAGTCTTTTGAGTCTCGATCCAATGAAATATGGCTTGTATTCAGTTATGAAGGCATGTCATTGTCTAAACTTTTATATACTGTGGAAGATGCATATGATACTGCTGAGAAAGAAAGATTTGAGCAAGTAAAACATGCTCAGATACTACGTCCATCAAAGTGGTGGCATTGGTTGAAAACTACAGAAGAAGGGCAAGAGGAAATGCGCAACCTTCTCTGGCAGTTGTTATTGGCTCTCAAGTCCTGTCACGATCGCAATATCACACACAGGGACATTAAACCTGAGAACATGGTGATATGCTTTGAAGATCAGGAGACGGGGAGATGCTTGAAAGAGATTCCAGCTAAAATCAATAAATTTTCCACCAAAATGCGTATTATCGATTTTGGAAGTGGAATTGATGAATTCACATTAAAGCATTTATATGGTTCTGCTGGGCCTTCTAGAGCTGAACAAACTTATGAATATACACCTCCTGAAGCTCTGCTAAATGCTAAGTGGTATCAAGGACCAACAAGCTCAACCTTGAAATATGACATGTGGAGCGTTGGTATTGTAATGTTAGAGTTGGTCTTAGGGACACCAAATGTTTTCCAGATAAATGCTTTAACACGTGCTCTTTTGGACCGGCATCTTGAGGGCTGGAATGACGGTGTGAAGCAGCTGGCATACAAACTTAGATCATTCATGGAATTGTGCATCTTAATCCCTGGGATTTCCGGCAGTTCCTCAAAAAAGTATCACACAGTGAACCAAGTTGGAGTTTCGCCTGCATCCTGGAAATGCTCTGAAGAATTCTTTTCTCGTCAAATTAAGAATCGAGATCCTCTGAAAATAGGTTTTTCAAACATCTGGGCTTTACGGTTAGTGCGCCATCTGTTACTCTGGGACCCAGAGGATCGTCCAAGTGTTGATGAGGCACTGCAGCATCCCTATTTCCAACCTCCCCCAAGAGGATGA 3093 0.4177 MIQYLLFALGFLLSATIPFSRGESSTCLTVYKNGGAPAVFQSPKCPRWKLTDYDSPPQTTARCQSAMLQGRRNSQEDRTLCVLDVRIPFPDAFGIKEVAVGIVAVFDGHNGAEASEMASKLLVEYFVLHTYFLLDAAYSVISKASTGTLLHKRDRDRVNLLHRWKEILGWQWHEKDFERFQNTFSANFDDSLHLEILKEALLRAIHDIDAKFSEEANKNSLHSGSTATIVLVADDKILVANIGDSKAFLCSEKFQSPREAKVKELTSDHHPDRDDERIRVETAGGQVLNWGGVPRINGQLAITRAIGDVFFKSYGVISAPEVTDWQPLTANDSYLVAASDGVFEKMNMQDVCDLLWEVHCFSNMRSECTCSSSYSLADFIVNTSFTKGSMDNVAAVVVPLESSKSSVNTLRRGYVENRDAGFPLFGPQEPASRSSAKDITSVLMHLEHPHLVDTKFKRILVEVKHGDFGCFYLSENLDEPVDSKQPAKKTDWEDYLYELPQPLPDALHQHVAVGGPVNLYNEHNFCFNLGPIVNEAKDQCINPEGFASFMGLLESIPLHDTGSNNGSSDYSFPDLRYVLKKSFGRGSYGEVWLAFHWNCNQGSNATNMSKDDNVRNSSSTTPDCQDGPSNYTLYILKRIMVERGSAVYLSGLREKYFGEIFLNASICVEDLLSAAKSNCVLETSQFGSFPNKFRLQRAMYEEGLNHIARYVESFESRSNEIWLVFSYEGMSLSKLLYTVEDAYDTAEKERFEQVKHAQILRPSKWWHWLKTTEEGQEEMRNLLWQLLLALKSCHDRNITHRDIKPENMVICFEDQETGRCLKEIPAKINKFSTKMRIIDFGSGIDEFTLKHLYGSAGPSRAEQTYEYTPPEALLNAKWYQGPTSSTLKYDMWSVGIVMLELVLGTPNVFQINALTRALLDRHLEGWNDGVKQLAYKLRSFMELCILIPGISGSSSKKYHTVNQVGVSPASWKCSEEFFSRQIKNRDPLKIGFSNIWALRLVRHLLLWDPEDRPSVDEALQHPYFQPPPRG 1030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3800g00011 1030 ProSitePatterns Serine/Threonine protein kinases active-site signature. 798 810 IPR008271 GO:0004672|GO:0006468
Gabi3800g00011 1030 FunFam uncharacterized protein LOC106771884 isoform X8 764 1025 - -
Gabi3800g00011 1030 CDD PP2Cc 69 400 IPR001932 -
Gabi3800g00011 1030 SUPERFAMILY Protein kinase-like (PK-like) 576 1026 IPR011009 -
Gabi3800g00011 1030 ProSiteProfiles PPM-type phosphatase domain profile. 62 400 IPR001932 -
Gabi3800g00011 1030 Pfam Protein phosphatase 2C 186 355 IPR001932 -
Gabi3800g00011 1030 SUPERFAMILY PP2C-like 60 401 IPR036457 -
Gabi3800g00011 1030 ProSiteProfiles Protein kinase domain profile. 577 1024 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3800g00011 1030 SMART serkin_6 577 1024 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3800g00011 1030 Gene3D Transferase(Phosphotransferase) domain 1 764 1025 - -
Gabi3800g00011 1030 SMART PP2C_4 54 398 IPR001932 -
Gabi3800g00011 1030 PANTHER PROTEIN PHOSPHATASE 57 399 IPR015655 GO:0004722|GO:0006470
Gabi3800g00011 1030 Gene3D - 58 408 IPR036457 -
Gabi3800g00011 1030 Pfam Protein kinase domain 772 1024 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3800g00011 Gabi-Chr3800 86194 110391 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3800g00011 641 1028 PP2C-type Phosphatase Gene Family AT3G63340 65.561 8.87e-180 526
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSKL Gabi3800g00011 Pkinase 1.2e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3800g00011 - - gmx:100781476 1821.59