Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3792g00065 ATGGAAGATGACACAACGTTCGAGCTGAGCAAGTGTGTTTCCTCGGTGTCGGAGGATTCCAGTTTCTGTTGCCCAATTTGCTTGGGATCATTGGTTCAAGTTTCCTACCTCGATAAATGTTTTCATAAGTTTTGCTTCAATTGCATTTTACGCTGGGCCAAAGTTGTTGCTGGCAAGCACCGTTCTCCACCTTCTTCTGTAAAATGCCCCCTTTGTAAGACAGAAAATTTTTCTATCATATATGGAGTTGATGGAAGTTGTTTTCAACGACATTATGTAAATAAGGATTTTGAGGATAGTTTTATCTTATCAAGAGCGCAGAGATATAGATTACAATGCTATTACACTGAACAAGGATTCTTAGACGACATATTCAATATATCGCAATATTGGAAATCTCATAAGTATTTTCAACCAAACTGCTGGCTTCAAAGTTGGTTAAGAAGGGAAATTCAAGCTCTTATCCAGGAGGAGGATGTTGACATCATTGTGCACCATATCCTTGGTGTGGTCAAACCATTATGGACTAGGAGAGAGCAGAAGTCACACATAAATGCACCTGAAAAGAAACAGGAAGAGTTCAAGATGTCAGTCTCTGAAGCAGCAAGGCCTTTTCTGGCAGTAAGAACGGACAGATTTGTATATGAGATTCAACTTTTTCTTGCTTCAGGATTGAATATAGAAGCTTATGATGCTGTTTACATACAAAGATTAGGTTGGAGCTCACCTGGGGTAAACACTGAGGTTTCTCAAAGTGAATTAATTGATCGCACAACTGTGATTCCATACCTGTATATATTTGATGACGACTCTGATGGAAATGAGTAG 828 0.3901 MEDDTTFELSKCVSSVSEDSSFCCPICLGSLVQVSYLDKCFHKFCFNCILRWAKVVAGKHRSPPSSVKCPLCKTENFSIIYGVDGSCFQRHYVNKDFEDSFILSRAQRYRLQCYYTEQGFLDDIFNISQYWKSHKYFQPNCWLQSWLRREIQALIQEEDVDIIVHHILGVVKPLWTRREQKSHINAPEKKQEEFKMSVSEAARPFLAVRTDRFVYEIQLFLASGLNIEAYDAVYIQRLGWSSPGVNTEVSQSELIDRTTVIPYLYIFDDDSDGNE 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3792g00065 275 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 110 IPR013083 -
Gabi3792g00065 275 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 18 236 - -
Gabi3792g00065 275 SMART ring_2 24 72 IPR001841 -
Gabi3792g00065 275 SUPERFAMILY RING/U-box 14 79 - -
Gabi3792g00065 275 ProSiteProfiles Zinc finger RING-type profile. 24 73 IPR001841 -
Gabi3792g00065 275 ProSitePatterns Zinc finger RING-type signature. 40 49 IPR017907 -
Gabi3792g00065 275 Pfam Zinc finger, C3HC4 type (RING finger) 24 72 IPR018957 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3792g00065 Gabi-Chr3792 636642 642347 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3792g00065 2 116 C3H Transcription Factor Family AT2G42030 29.060 5.66e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3792g00065 - - gmx:100808733 488.419