Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3792g00043 ATGGCACCTACGAGGAAATCTAGAAGTGTTAATAAGCGGTTTTCAAGTTCAAATGAGGTTTCTCCAGAGAAAGATGGAGTTAACTCAAATAAAAACAAGCAACGGAAGAAAAAGTTGTCTGATAAATTGGGATCTCAGTGGAGCAAGGAGGAACTAGAGCGGTTTTATGAAGCATACAGGAATTACGGGAAAGACTGGAAGAAGGTGGCTGCCACTGTACGTAATAGATCCATTGAAATGGTGGAAGCTCTTTACAATATGAATCGGGCATACCTTTCTCTGCCAGAGGGGACTGCTTCTGTTGTTGGTCTCATTGCAATGATGACAGATCACTATAATGTGTTGGAAGGGAGTGAGAGTGAAAGGGAGAGCAATGATGCACCAGGATCTCGAAAACCTGTGAAACGAAAGCGTGAAAAAGTTCAGCTTAGTGTCTCCAAAGATCCTGTCCAGTCTCAGTCAATTGCTTCCAGTGATGGTTGCCTCTCTCTATTGAAGAAGAGACGCTTTGATGGTATTCAGCCGCATGCTGTTGGGAAAAGGACACCTCGCGTCCCAGTTTACTACCCTTATAAAAAAGATGATGGGGAAAATTTTGTTTCACCTAATAAAAGAAGCCTGAAGTCAACTGTTGATACAAATGATGATGAAGTTGCACATGTTGCCGCTTTGGCATTAACTGAGGCTGCACAAAGAGGGGGCTCTCCCCAAGTTTCTCAAACACTGCATAGAAGAGCAGAGCAAAAGTCCTCTCCTGTTCAGAGATGGGGAAAAATGCACCAAAAATCTGAGACAGCTCGTGCCAAGTTTCGTGATGCTTCTCCGGATGAAGAGTTCTTGGAAGGTAGTATAGAAAGCAGGGGAGCTGAAAATGGCGAAAATGCTAAAGATACTAGTTCCTTGATGGATATGGAAGACATAGGCACCGTTGAAGTTCTTCAGAAGGGGAAAAAAAATTACAGAAAGAAAGAGAGAGTGGAAAATGTTGGAAATCATCAGCTTGATGATGGTGGAGAAGCATGCAGTGGCACTGAAGAAGGACCTAGTTCTAGTTCTTTGAAGGAAAAGGTTGATATTGAGGTTACTAATGAAAAACTTGAGCAATTCTCTCTAAAAAGTCACAGAAACAGAAGCAAGAAACTCTTCTTTAAAGATGAAACGCCCTCCTTGGATGCTTTGCAGACTTTGGCTGATCTGTCTCTAATGATGCCAATATCTACAGTAGAATCTGACACCGTTGATGAAGATGATAAGTCTGCTTTGCCTGAAGCTACATCAACAAGCCATAAGAAATATAAACTGAAACTCCGTGTGGGCCCTGGAGTTGAGGCTTCAACCTCCAAAAAATCTAAACTCGGAAAGGAATCGGCAAATGATACTAATGTTATCTCTAAATCAAAAGAGCAGTCTCCTTTTGCTGATAGAACATGTAAAAGAAAACGCAAGTCTGTGGTTTCAAAGGTTGCAAATGCAAAGCTTGATTCTACTCCAAGTAATCCCTTGAATAATGAGGCTGTAGATGATGAGAACAAACCAGTGATCAAAGGAAAACACATTGGTCAGGTTTTTCTGCTACCAAAACAATTGAAGAAGGTCAGATCATCAGAGAGTTCCCTGTGTAGTGATCAGAAAGATTTGACAGTATCAACTGCAGAAGTTCCCCTTTTGAATGAAGTTGGTTTACCAACTAAAAAAAGAAGTAGACGTAAGATGATTTCACAAAGAACATTCATGTCTAGAGAGAAGTCTTCCGAGAACATATTGAAAAGTCAACCTAATAAGTACTCTAGCCTAAAGGAAAAGGTTTCTAGTTGCTTGTCATCTAAATTGTTTCGTAGATGGTTTACTTTTGAATGGTTTTATAGCGCAATTGATTATCCATTTTTTGCCAAAATGGAGTTTGAGGAGTATTTAAATCATGTTGGACTAGGGGATATCCCAAGGCTAACTCGTGTTGAATGGAGTGTTATAAAAAGTTCCCTTGGCAAACCTCGCAGGTTTTCTAAACATTTTCTAAATAAAGAAAGACAAAAACTTGAACTGTATCGGGAAACAGTGAGGAAACATTACACTGAAATGCGAACTGGCATCAAGGATGGACTTCCAACAGATTTAGCTAAACCATTATTTGTTGGACAGCGAGTAATTGCTATGTACCCAAAAACAAGACAGATTCATGATGGTAGTGTGCTTACAGTTGACCATGACAAGTGCAGGATTCAGTTTGACTGTCCTGAATTAGGGGTTGAATTTGTCAAGGACATTGATTGCATGCCTGTGAATCGATTAGATAATATGCCAGAAGCTATGAGGAGGCAGATTGGTGCCAGAAAAGGCTCTTTTATGATTAAAGAGCCACAGATTAATGGAAATTCAAGTTTTGGGGGGTGCGAAATACATGCTTCACCTATGAAGGGGGATGTTAACTATGTCGTTGCCCAAACAAAGGCTGCTACTATTGATAACCTCTGCACACAACCAGCAGTTTGTGCTCAACCGTGTAAAGTGACACACCATAAAGCTAAGGAAGCTGATATTCATGCACTTTCTGAACTAAAGCGTGCTCTAGATAAAAAGGAGACATTATTAATGGAGCTTAGAAATGCAAGTAGTGACATATTGGAAAATCAAAATGACATAGAGTGCTTTAAAGATTCTGAGGCTTTCAAGAAGCATTACGCCACGGTTTCTGATGCTATGCTTCGCTTGAGGCAACGCAATACTTACACAGGAAACTCCCTGCCACCATGGATGAAGCCCCAGACAAGTTTCAGTGTTCACGACAACCTTCCTAGTATGTTGGATAATTCTCTAGCACAAGAGTTAGGGTCAACTGTCATTGACATTATTAAAGGATCCAGGCTAAGGGCACATGCAATGGTGGATGCTGCATTTCAGGCATTGTCTTTGACAAAGGAAGGTGAAGATGCTTTCACGAGGATTGGACAGGCGTTGGATTCTATTGATCATCAGCAGTTGGCTTTCAAGTCTAGGTTGCCTATGATCAGGTCCCAGGAGCAAGTGAATGGCAGTTTTTATCATCATAATCGGTCAACTTGCTGTGCATCAGACCCTTTACTTAATGATGCATCTGGTCCAAAACAGCATAACGATTCTGATAAAGCTGATATTGAAATTCCATCAGAGCTCATCACTTCATGTGTTGCTACATTAATCATGATCCAGACTTGTACTGAACGGCAATACCCTCCAGCTGATGTGGCTCAAATATTAGATTCTGCCGTTACCAGCCTGCATCCATGCTGTCCTCGAAACCTTCCTATTTACAGAGAAATTCAAATGTGCATGGGAAGAATTAAGACCCAGATTTTAGCTCTCATCCCCACTTGA 3351 0.4094 MAPTRKSRSVNKRFSSSNEVSPEKDGVNSNKNKQRKKKLSDKLGSQWSKEELERFYEAYRNYGKDWKKVAATVRNRSIEMVEALYNMNRAYLSLPEGTASVVGLIAMMTDHYNVLEGSESERESNDAPGSRKPVKRKREKVQLSVSKDPVQSQSIASSDGCLSLLKKRRFDGIQPHAVGKRTPRVPVYYPYKKDDGENFVSPNKRSLKSTVDTNDDEVAHVAALALTEAAQRGGSPQVSQTLHRRAEQKSSPVQRWGKMHQKSETARAKFRDASPDEEFLEGSIESRGAENGENAKDTSSLMDMEDIGTVEVLQKGKKNYRKKERVENVGNHQLDDGGEACSGTEEGPSSSSLKEKVDIEVTNEKLEQFSLKSHRNRSKKLFFKDETPSLDALQTLADLSLMMPISTVESDTVDEDDKSALPEATSTSHKKYKLKLRVGPGVEASTSKKSKLGKESANDTNVISKSKEQSPFADRTCKRKRKSVVSKVANAKLDSTPSNPLNNEAVDDENKPVIKGKHIGQVFLLPKQLKKVRSSESSLCSDQKDLTVSTAEVPLLNEVGLPTKKRSRRKMISQRTFMSREKSSENILKSQPNKYSSLKEKVSSCLSSKLFRRWFTFEWFYSAIDYPFFAKMEFEEYLNHVGLGDIPRLTRVEWSVIKSSLGKPRRFSKHFLNKERQKLELYRETVRKHYTEMRTGIKDGLPTDLAKPLFVGQRVIAMYPKTRQIHDGSVLTVDHDKCRIQFDCPELGVEFVKDIDCMPVNRLDNMPEAMRRQIGARKGSFMIKEPQINGNSSFGGCEIHASPMKGDVNYVVAQTKAATIDNLCTQPAVCAQPCKVTHHKAKEADIHALSELKRALDKKETLLMELRNASSDILENQNDIECFKDSEAFKKHYATVSDAMLRLRQRNTYTGNSLPPWMKPQTSFSVHDNLPSMLDNSLAQELGSTVIDIIKGSRLRAHAMVDAAFQALSLTKEGEDAFTRIGQALDSIDHQQLAFKSRLPMIRSQEQVNGSFYHHNRSTCCASDPLLNDASGPKQHNDSDKADIEIPSELITSCVATLIMIQTCTERQYPPADVAQILDSAVTSLHPCCPRNLPIYREIQMCMGRIKTQILALIPT 1116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3792g00043 1116 MobiDBLite consensus disorder prediction 232 247 - -
Gabi3792g00043 1116 ProSiteProfiles Myb-like domain profile. 45 77 IPR001005 -
Gabi3792g00043 1116 SMART DIRP_2 620 721 IPR033471 -
Gabi3792g00043 1116 SMART sant 43 91 IPR001005 -
Gabi3792g00043 1116 MobiDBLite consensus disorder prediction 230 303 - -
Gabi3792g00043 1116 MobiDBLite consensus disorder prediction 116 154 - -
Gabi3792g00043 1116 MobiDBLite consensus disorder prediction 443 483 - -
Gabi3792g00043 1116 PANTHER LIN-9 1 1116 IPR010561 GO:0006351|GO:0017053
Gabi3792g00043 1116 Pfam Myb-like DNA-binding domain 45 82 IPR001005 -
Gabi3792g00043 1116 Coils Coil 849 872 - -
Gabi3792g00043 1116 MobiDBLite consensus disorder prediction 116 144 - -
Gabi3792g00043 1116 MobiDBLite consensus disorder prediction 26 45 - -
Gabi3792g00043 1116 ProSiteProfiles SANT domain profile. 42 77 IPR017884 -
Gabi3792g00043 1116 MobiDBLite consensus disorder prediction 456 470 - -
Gabi3792g00043 1116 MobiDBLite consensus disorder prediction 316 332 - -
Gabi3792g00043 1116 FunFam Protein ALWAYS EARLY 3 isoform A 3 99 - -
Gabi3792g00043 1116 Pfam DIRP 619 719 IPR033471 -
Gabi3792g00043 1116 SUPERFAMILY Homeodomain-like 42 90 IPR009057 -
Gabi3792g00043 1116 MobiDBLite consensus disorder prediction 316 356 - -
Gabi3792g00043 1116 MobiDBLite consensus disorder prediction 1 45 - -
Gabi3792g00043 1116 MobiDBLite consensus disorder prediction 260 284 - -
Gabi3792g00043 1116 Gene3D - 3 99 - -
Gabi3792g00043 1116 CDD SANT 47 81 IPR001005 -
Gabi3792g00043 1116 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3792g00043 Gabi-Chr3792 455184 474606 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gabi3792g00043 DIRP 7.8e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3792g00043 - - gmx:100816217 1693.71