Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3792g00041 ATGTTTGGTTCAGTAGCGAGTAGAAGACAAGGGAGTAGTGGAGTAGCAGAATCCATTTTGATTCCCAAACAATTTATTTGGCCTTATGGAGGAAGAAGGGTGTTTCTATGTGGTTCTTTCACGAGGTGGGCAGTATCTATACCCATGTCTCCGATGGAAGGATGCCCGACTGTATTTCAAGTTATTTGCAGGCTAATGCCAGGATATCATCAGTACAAATTTAATGTGGATGGTGAGTGGCGGCACGATGAGCAGCAGCCATTTGTATTTGGGAACTATGGGTTAGTAAATACTATTTATTTAGTGAGAGAACCATCTATCTTACCTGCCATATTAAGGGTTGAAGCACCTGGTAGATCCCACATGGAGGTTGACAATGATGTTGTTAGGCATGTGGTACCTACCTTGACTTTGGAACTTTTTCAGGAAGCTGATCCAAGGATGTCGGAGTCTGATCTGCAGGTCTCTCGTTACGGCATTTCTACATTCTTGTCTACACATACTGCTTATGAGTTGCTTCCCCAGTCAAGCAAGGTTATTGCCTTGGATATAAATTTACCAGTTAAGGAAGCATTCCATGTTTTTTATGAACAGGGAGTATCTTTGGCTCCTCTATGGGATTCTTGCAAGTGCCAGTTTGTGGGAGTGCTTAGCGCATCGGACTTCATTTTAATACTGAAAGAGCTGGGGAATCATGGATCAAACTTGACAGAAGAACAACTTGCGACACATACTATCGCAGCATGGAAAGAGGGAAAGTTACAGCAATGTGCAACTGATAGCAGTGGGAGTACATATCCTCAGCGTTTTGTTCATGCCGGGCCCCATGAGTGTCTAAAAGATGTAGCTTTGAAAATTTTGCAAAACAAGATGGCAACAGTTCCTATTATCCATTATTCTTCAGAGGATGGTTCATTTCCTCAGCTGCTTCATCTTGCTACCCTCTCAGGAATACTGAAATGTATATGCAGGCATTTTGAGCACTCTTGTGGTTCCTTACCCATTCTTCAACTGCCAATAATTTCAATACCTTTGGGTACATGGGCGCCAAAAGTGGGGCAATCCAATAAAAAGCCGCTTGCTATGCTAAGGCCAAATGCTTCTCTTGGTGCTGCTCTATCTCTGTTGATTCAAGCTGAAGTTAGCTCAATACCTATTGTGGATGATAATGATTCATTGCTTGATATATATTCAAGAAGTGATATTATTGCATTGGTCAAAGATAAAGCATATGCTGGGATAAGTCTGGACAAATTTAGTATCCATCAGGCATTGCTTTTGGGACGAGGTGCAAATTCTCCTTACGGGCTTCACAATGGCCAGAGATGTCATATGTGTTTGGCGTCTGATTCATTGCACAAAGTGATGGAGCGGTTGGCTAATCCTGGGGTTAGACGACTTGTGATTGTGGAGGCTGGAAGCAGGCGCGTGCAAGGGATCATTTCCTTAGGTGATGTATTCAGATTCTTGTTAGGCTAA 1479 0.4273 MFGSVASRRQGSSGVAESILIPKQFIWPYGGRRVFLCGSFTRWAVSIPMSPMEGCPTVFQVICRLMPGYHQYKFNVDGEWRHDEQQPFVFGNYGLVNTIYLVREPSILPAILRVEAPGRSHMEVDNDVVRHVVPTLTLELFQEADPRMSESDLQVSRYGISTFLSTHTAYELLPQSSKVIALDINLPVKEAFHVFYEQGVSLAPLWDSCKCQFVGVLSASDFILILKELGNHGSNLTEEQLATHTIAAWKEGKLQQCATDSSGSTYPQRFVHAGPHECLKDVALKILQNKMATVPIIHYSSEDGSFPQLLHLATLSGILKCICRHFEHSCGSLPILQLPIISIPLGTWAPKVGQSNKKPLAMLRPNASLGAALSLLIQAEVSSIPIVDDNDSLLDIYSRSDIIALVKDKAYAGISLDKFSIHQALLLGRGANSPYGLHNGQRCHMCLASDSLHKVMERLANPGVRRLVIVEAGSRRVQGIISLGDVFRFLLG 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3792g00041 492 SMART cbs_1 442 491 IPR000644 -
Gabi3792g00041 492 SMART cbs_1 359 407 IPR000644 -
Gabi3792g00041 492 SMART cbs_1 178 227 IPR000644 -
Gabi3792g00041 492 Pfam Glycogen recognition site of AMP-activated protein kinase 21 105 IPR032640 -
Gabi3792g00041 492 Gene3D - 339 492 IPR046342 -
Gabi3792g00041 492 ProSiteProfiles CBS domain profile. 355 416 IPR000644 -
Gabi3792g00041 492 ProSiteProfiles CBS domain profile. 175 234 IPR000644 -
Gabi3792g00041 492 Gene3D Immunoglobulins 18 103 IPR013783 -
Gabi3792g00041 492 Pfam CBS domain 358 406 IPR000644 -
Gabi3792g00041 492 Pfam CBS domain 444 491 IPR000644 -
Gabi3792g00041 492 SUPERFAMILY CBS-domain pair 357 491 IPR046342 -
Gabi3792g00041 492 CDD E_set_AMPKbeta_like_N 24 102 - -
Gabi3792g00041 492 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 148 490 - -
Gabi3792g00041 492 FunFam Sucrose nonfermenting 4-like protein 18 102 - -
Gabi3792g00041 492 Gene3D - 149 330 IPR046342 -
Gabi3792g00041 492 SUPERFAMILY CBS-domain pair 160 328 IPR046342 -
Gabi3792g00041 492 SUPERFAMILY E set domains 22 103 IPR014756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3792g00041 Gabi-Chr3792 435779 447212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3792g00041 30 92 Protein tyrosine phosphatase (PTP) family AT3G52180 37.500 8.96e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3792g00041 - - gmx:100790062 756.903