Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3792g00039 ATGGCTGATTTTTTCACCTCGACCCACCGAGCTAAGTGGATCTTCTCTCCTCAACAGCTGGTTGAGAAATATAGAGCTGCTAATCAGAGAGCCAAACAAATTCTAGAGAAGAGTGGAGCAACTCTAATGGAAGTAGATGTTGATGGGTCGTTGTCATATCCTGAAGCCCAGATGACCGCAAAGGATAATGCTGAAAAGCATTCTCGGACAAAACCTCTTAGTATTGAAGAAGAACAATGCATAAGGGTATTTTATGAAAACAAGCTACAAGAAGTATGTAACAATTTTCACTTCCCTCATAAGATCCAGGCAACTGCCCTCATCTATTTTAAAAGGTTCTACTTGCAATGGTCGGTGATGGAACATCAACCAAAAAATATAATGTTGACCTGCATATATGCTGCTTGTAAGATAGAAGAAAATCATGTATCAGCTGAGGAGCTTGGTAAGGGGATTTCACAGGATCATCAAATGATTCTCAATAATGAGATGATAGTTTATCAGAGTTTGGAATTTGATCTTATTGTTTATGCACCATATCGCTCTGTTGAAGGTTTTATAAATGATATGGAGGAATTTTGTAATGCTGGTGATGACCAGCTTCAAATGCTCAAGAATTTGCAAGATACAGCAAGATTGGAAGTTGATAAAATGATGCTTACAGATGCACCACTTTTATTTCCTCCTGGGCAGTTGGCTTTGGCGGCTTTGCGTAACTCAAATGCATTCCATAAAGTTCTTGACTTTGATAGTTACCTGAGCAGCATTTTTTCCCGTCAGAATTCCATGCATACAATGTCCGAGCTTTTTGAATCACTGAATGAAATTGATTCTTGGGTTAGAAAATACAAAGTTCCTTCAGAGAAGGAATTGAAGCATATCAACAGGAAACTGAAGTCTTGTTGGGGTCTTAGCTCCCATGACGAGGGCAAGAAGCGGGAGAAGAAATCAAAGCACAAGTCTAAAAAGAGCTCAAATGAAGCACAAAATGTGCCATCTCTTGTATAA 1008 0.3899 MADFFTSTHRAKWIFSPQQLVEKYRAANQRAKQILEKSGATLMEVDVDGSLSYPEAQMTAKDNAEKHSRTKPLSIEEEQCIRVFYENKLQEVCNNFHFPHKIQATALIYFKRFYLQWSVMEHQPKNIMLTCIYAACKIEENHVSAEELGKGISQDHQMILNNEMIVYQSLEFDLIVYAPYRSVEGFINDMEEFCNAGDDQLQMLKNLQDTARLEVDKMMLTDAPLLFPPGQLALAALRNSNAFHKVLDFDSYLSSIFSRQNSMHTMSELFESLNEIDSWVRKYKVPSEKELKHINRKLKSCWGLSSHDEGKKREKKSKHKSKKSSNEAQNVPSLV 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3792g00039 335 Pfam Cyclin, N-terminal domain 80 174 IPR006671 -
Gabi3792g00039 335 Pfam Cyclin C-terminal domain 179 300 IPR031658 -
Gabi3792g00039 335 CDD CYCLIN_AcCycH_rpt1 3 174 - -
Gabi3792g00039 335 Gene3D - 177 282 - -
Gabi3792g00039 335 MobiDBLite consensus disorder prediction 304 335 - -
Gabi3792g00039 335 PANTHER CYCLIN 60 325 IPR043198 GO:0006357|GO:0016538
Gabi3792g00039 335 Gene3D - 63 175 - -
Gabi3792g00039 335 FunFam Cyclin h 177 282 - -
Gabi3792g00039 335 SMART cyclin_7 87 168 IPR013763 -
Gabi3792g00039 335 CDD CYCLIN_AcCycH_rpt2 177 301 - -
Gabi3792g00039 335 SUPERFAMILY Cyclin-like 179 304 IPR036915 -
Gabi3792g00039 335 FunFam cyclin-H1-1 63 175 - -
Gabi3792g00039 335 SUPERFAMILY Cyclin-like 13 176 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3792g00039 Gabi-Chr3792 416558 422226 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3792g00039 1 280 Core Cell Cycle Gene Families AT5G27620 65.714 2.51e-135 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3792g00039 K06634 - gmx:547736 609.757