Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3792g00037 ATGGACAACAACAATAATGAGCAAGATAGAGCGTTGCCAATTGCAAATGTGGGTCGAATCATGAAACAAATTCTTCCTTCAAGTGCAAAGATCTCCAAAGAAGGCAAACAAGTAATGCAAGAGTGTGTCACAGAGTTCATAAGTTTTGTGACTGGCGAGGCATCTGACAAGTGTCACAAGGAGAATCGCAAGACCGTTAATGGTGATGACATCTGTTGGGCTTTAAGTTCCTTAGGGTTTGACAACTATGCTGAGGCCATTGGAATGTACTTGCATAAATACAGGCACGCTGAGAGAGAGAAGATGAATCAGAACAAACTTGAAAGCACCAAAGAATTTAAGTATGAAGGATCATCAACAAAAACAAGTAGCCAACATGAGAAGCAAACTGAAATTCTTGCTCCAGTACTTGACTGTAGTAGGGTTACTGATCATGACAAGGTTGAAAACTCTCCTGCAAATCAATCTGCTGCTGGCTGA 480 0.4104 MDNNNNEQDRALPIANVGRIMKQILPSSAKISKEGKQVMQECVTEFISFVTGEASDKCHKENRKTVNGDDICWALSSLGFDNYAEAIGMYLHKYRHAEREKMNQNKLESTKEFKYEGSSTKTSSQHEKQTEILAPVLDCSRVTDHDKVENSPANQSAAG 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3792g00037 159 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Gabi3792g00037 159 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Gabi3792g00037 159 PRINTS CCAAT-binding transcription factor subunit A signature 39 57 - -
Gabi3792g00037 159 MobiDBLite consensus disorder prediction 116 130 - -
Gabi3792g00037 159 FunFam Nuclear transcription factor Y subunit B-6 1 116 - -
Gabi3792g00037 159 MobiDBLite consensus disorder prediction 101 159 - -
Gabi3792g00037 159 MobiDBLite consensus disorder prediction 101 115 - -
Gabi3792g00037 159 Gene3D Histone, subunit A 1 136 IPR009072 GO:0046982
Gabi3792g00037 159 SUPERFAMILY Histone-fold 8 116 IPR009072 GO:0046982
Gabi3792g00037 159 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 3 128 IPR027113 GO:0001228|GO:0006355|GO:0016602
Gabi3792g00037 159 ProSitePatterns NF-YB/HAP3 subunit signature. 42 58 IPR003956 GO:0005634|GO:0006355|GO:0043565
Gabi3792g00037 159 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 11 75 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3792g00037 Gabi-Chr3792 402443 402922 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3792g00037 7 106 CCAAT-HAP3 Transcription Factor Family AT1G09030 76.000 5.54e-56 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Gabi3792g00037 CBFD_NFYB_HMF 3.5e-25 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3792g00037 K08065 - gmx:100815151 200.675