Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3792g00035 ATGTCAAACATCACAAGTGGTGATAGTAGGAGCTTCTCTTCAGAGAATATCATAGAAGATGCAGTTAAACAGCAATCAGAGATGCTTGGTCAGTTCCATAGTCCACATTCTCATACTTCAACAGCAACAACAAATAATAATAGCAATGGTTCGAACACAAACTCACAACCACCTGCACCACTTAAGAAGAAAAGGAACCTACCAGGAAATCCAGATCCAAGTGCTGAAGTGATAGCTCTATCACCAAACACACTCATGGCTACAAACAGGTTCATATGTGAAATATGTAACAAAGGGTTTCAGAGAGATCAAAACCTTCAATTGCACCGGCGAGGTCACAACTTGCCATGGAAGCTTAAACAGAGAAGCAGCACAGAAGTTAGAAAGAGGGTTTATGTTTGCCCAGAAGCCTCATGTGTCCACCACAACCCAGCAAGAGCACTAGGTGATCTTACTGGCATTAAAAAGCACTTCTGCAGAAAGCACGGCGAGAAGAAGTGGAAATGTGATAAGTGCTCAAAGAAATACGCTGTTCAATCTGACTGGAAAGCCCATTTCAAAATCTGTGGTACAAAGGAATACAAATGTGACTGTGGAACCATCTTTTCCAGAAGAGATAGCTTCATTACCCACAGAGCTTTTTGTGACGCTTTGGCTGAGGAGAATAACAAAGCCAATGAAGGACAATTATCAAAGATGGGTTCAAATAACTTGCAATGCCAAACAATCCCAAACCCACAAATTGGAGGGAATTCAGAATTCAACCATTCTGATCACAAGCATCCATTATCACTACCTCACGAGCTCATGCCAATGCCTTCAAAACCCTTCAACAACAACAACAACAACATGGCTGGAACCGTATTCACAAGAAGCCTTTCATCAAGTTCATCTCCCTCTCTTCAACTGAGTTCAAATCCACTAAACATCTTTGAGGAAAACGGGATTCACTTAGCTGCAGGCTCACCACACATGTCCGCCACAGCATTGTTGCAAAAAGCTGCACAAATGAGTGCAACCGTGAGCAATAGCAGCAACATGATGGAGAAAAGTTTTGTCACAAACATGGCACCGCCATCATTTGGTGTGGTGCAACAAACACCAAATGGACATTCTTCCTTCATGAACCAGTACATGCACAATGGTCAACAGGATATTTCTCATCAGTATAATTTCAATGCAAATGGGATTATTGGTGGTGGTGGTGGCAGCATTGGAATGAATGGTGTGGATATGTTTCATGCTATATTGGATCAAAGTAAAGCTTTGTCGAAGATCATAGAGCAGAACAACCGAAGCAATAGTGGAGGTCCAACAAATGGTGGGTCAAGTAGTGCTATTAATAACATTATTGGTGGAAGTAAAGGAAATGGGGATGTAATGACTCTGGACTTGTTGGGGATAGGAGGAGGAGGAGGAGGTGGTGGTGGTAATGGTGCACATGGAAATTTCTATGGCGGTACCCAACAAGAAGAAACTGGTGCACGAGATGAGGTTTGGAGAAATTGGTCCACCAAAAATGCAGGCTTTGAATCATTTTCTGCAACAAGCAGCATTTGA 1560 0.4237 MSNITSGDSRSFSSENIIEDAVKQQSEMLGQFHSPHSHTSTATTNNNSNGSNTNSQPPAPLKKKRNLPGNPDPSAEVIALSPNTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRSSTEVRKRVYVCPEASCVHHNPARALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHFKICGTKEYKCDCGTIFSRRDSFITHRAFCDALAEENNKANEGQLSKMGSNNLQCQTIPNPQIGGNSEFNHSDHKHPLSLPHELMPMPSKPFNNNNNNMAGTVFTRSLSSSSSPSLQLSSNPLNIFEENGIHLAAGSPHMSATALLQKAAQMSATVSNSSNMMEKSFVTNMAPPSFGVVQQTPNGHSSFMNQYMHNGQQDISHQYNFNANGIIGGGGGSIGMNGVDMFHAILDQSKALSKIIEQNNRSNSGGPTNGGSSSAINNIIGGSKGNGDVMTLDLLGIGGGGGGGGGNGAHGNFYGGTQQEETGARDEVWRNWSTKNAGFESFSATSSI 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3792g00035 519 Gene3D Classic Zinc Finger 70 140 - -
Gabi3792g00035 519 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 43 486 IPR031140 -
Gabi3792g00035 519 FunFam protein indeterminate-domain 12-like 70 138 - -
Gabi3792g00035 519 FunFam protein indeterminate-domain 5, chloroplastic-like 145 224 - -
Gabi3792g00035 519 MobiDBLite consensus disorder prediction 1 75 - -
Gabi3792g00035 519 SUPERFAMILY beta-beta-alpha zinc fingers 90 187 IPR036236 -
Gabi3792g00035 519 ProSitePatterns Zinc finger C2H2 type domain signature. 93 113 IPR013087 -
Gabi3792g00035 519 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 113 IPR013087 -
Gabi3792g00035 519 MobiDBLite consensus disorder prediction 1 60 - -
Gabi3792g00035 519 SMART c2h2final6 167 187 IPR013087 -
Gabi3792g00035 519 SMART c2h2final6 91 113 IPR013087 -
Gabi3792g00035 519 SMART c2h2final6 132 162 IPR013087 -
Gabi3792g00035 519 Pfam Zinc-finger double-stranded RNA-binding 91 113 IPR022755 -
Gabi3792g00035 519 Gene3D Classic Zinc Finger 145 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3792g00035 Gabi-Chr3792 331937 335865 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3792g00035 48 347 IDZ Gene Family AT3G50700 56.119 2.28e-118 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi3792g00035 zf-C2H2_jaz 7.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3792g00035 - - gmx:100785295 731.48