Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3792g00031 ATGGATCACACAAGATCGACCTCAGGGAATAACGGTGAGGAAAATGGAGGGATTCCAGATGATTTGCGGTGCAAGAGATCCGATGGGAAACAATGGAGATGCACGGCGATGTCGATGCCTGACAAGACGGTGTGCGAGAAGCACTACATTCAGGCTAAGAAGAGAGCTGCGAATTCTGCAATGAGGGCTAACCTAAAGAAAGCAAAGAGGAAGTCACTGTCACTGGGAGAGTCTGATATTTATTTGGAGAGCAAGAGTGACGATTTCGATGTGCCACTTTCCACCACCATCAACAACAGCCACAACAACCACTCTGGGAAGAAGTTATTGAGTAGGGTTTCCAAGAACCAGTTTCGTTATACCCCCGAGCCTGACACTAAAAGGGCTTCCTCCGCCCGCCGTGCTCCCAAGCCAAATGATGATTCGCCAGATGAGGATGAAGATGAAGATGAAGATGAAGATGAGGATGAAGATGAGGATGAGGATGAGGTTGAGGAGGATGAGGATGAGGATGAGGATGTGGATGTCCCTATGTATGAAGAGAGTAATTGGGTGTCCTATGATTCGCCCCCGGCTTCTGGGGTCGATTCCTCCAGGAAAATATCGCAGAGGAGCTTCGATGCTAATGCTACAAATGAATATTCTGATGAAACCTCCGGTTGTTCTGAAGACACTGGTGGGCAAACTTGCCATCAATGCCAGAGGAATGACAGAGACCAAGTTACTTGGTGCCTCCGGTGTGATAGAAGAGGATACTGTGATAGCTGTATATCAACATGGTACTCGGACATTTCATTGGATGAAATTCAGAGGATATGTCCTGCATGCCGTGGCATATGTAATTGCAAAATTTGCTTACGTAGTGATAATTCAATAAAGATTAAGGTTCGGATACGTGAGATACCTGTTCTAGATAAGTTACAGTATCTCCACTTGCTGCTGTCATCAGTGCTTCCTGTAGTAAAGCAGATCCATCGTGAACAGTGTTTTGAAGTTGAACTTGAAAAGAAGTTGCGTGATCTTCCCAGGACAAAATTGAATGCAGATGATTTGATGTGCTGCAATTTATGTAGGATACCTATTACTGATTATCATCGACGCTGTCCAAGTTGCTCATATGATTTGTGTCTTAATTGTTGTCGGGATCTTCGAGAAGCAACTGTAGATCACAATAAAGAACCCCAAACAGAGCAAGTAAAATCTTCTGATCAAAACATATTAAGCAAGTTTCCTCATTGGAGATCCAATGACAATGGAAGTATTCCATGCCCCCCAAAGGAGTATGGTGGCTGTGGTTGTTCATCATTAAATCTAAGCCGGATTTTCAAGATGAATTGGGTTGCAAAGTTGGTGAAAAATGTAGAGGAAATGGTTAGTGGCTGCAGAATTAGTAATGGAGATGGTCCACCAGAAACTGGGTTGAATGGTATCAGACTTTGCCAATATTCTCAAAGAGACGCTAGTAATGATAATTATCTTTATTGTCCTGCATCTGAGGATCTCAAAACTGATGGGATTATCAATTTTAGAAAGCACTGGAAAACTGGTGAGCCCATTATTGTCAAGCAAGTATTTGATAGGTCATCCATTTCATGTTGGGATCCAATGGTCATATGGAGAGGGATTCAAGAGACAACAGATGAGAAAATGAAAGACGAAAACAGAATAGTTAAGGCCATAGATTGTTTTGATTGGTCTGAGATTGATATTGAGCTTGGTCAGTTCATGAAAGGATACTCTGAGGGTCGTTTTCATGAAAATGGTTGGCCACAAATATTGAAGTTGAAGGACTGGCCTTCACCTAGTGCATCTGAAGAATTTCTATTGTTCCAAAGACCTGAATTTATCAGCAAACTGCCTTTACTTCAGTATATTCACTCCAAGTGGGGCCTTCTTAATGTTGCGGCTAAATTGCCTCATTACTCCTTGCAGAATGATGTAGGACCCAAGATTTATATATCTTATGGGATTAGTGATGAACTTGGTAGAGGTGATTCAGTGACAAATCTCCATTTCAATATGCGTGACATGGTCTACCTTTTGGTCCATACTAGTGAAGTGAAGTTGAAGGACTGGCAGAAAACTAAAATTGAAATGCTACAAAAAGCTTATAAGGAATCTGAGGCGAAAGAATCGTGTGGGGATCCACAAATATGTTTGAGGGGGAGTTCACCTGATTCCTTGCTTAAAACAAAAAATAATGGACTGAACTTGGATTCAAACCAGAATAAGCCAATTATGGATCAAGGATTTGAAATTTATTCTAGCGCTGAAGGGAATAGGGTCGATGGCGACCTTCCATTCAGACAAAATGGAGATGCCTCTGAGAAAACACGTCCTGGAGTTCTTTGGGATGTCTTTCGTCGGCAGGATGTTCCCAAGGTGACTGAATATTTGAAAATGCATCGGAAGGAATTTGGGAAGCAAGACATAGTAAATGAATTTGTAACATGGCCTCTTTATGATGGAGATATTTTTCTTGACAGACACCATAAAAGAAAGTTGAAGGAAGAATTTGGAGTGGAGCCATGGTCATTTGAACAGAATTTTGGGGAAGCTGTATTTGTTCCTGCTGGGTGCCCTTTCCAAGCAAGGAATGTTCAGTCCACTGTTCAGTTGGGCTTTGATTTCTTATCTCCGGAAAGTTTGGGGGAGGCTGTGAGATTAGCAGAGGAAGTCCGCCGTCTACCTAATGAACATGAAGCAAAGCTTCAAGTATTGGAGGTTGGGAAGATATCTCTGTATGCGGCAAGTTCAGCCATCAAAGAAGTTCAGAAACTTGTACTTGACCCGAAACTTGGAGCAGAGATCGGATATGGAGACCCTAATTTGACTGCAATGGTTTCTGAGAATTATGAGAAGATGGTTAAGCGGAGGCAGATTACTTGTGCTTGA 2895 0.4225 MDHTRSTSGNNGEENGGIPDDLRCKRSDGKQWRCTAMSMPDKTVCEKHYIQAKKRAANSAMRANLKKAKRKSLSLGESDIYLESKSDDFDVPLSTTINNSHNNHSGKKLLSRVSKNQFRYTPEPDTKRASSARRAPKPNDDSPDEDEDEDEDEDEDEDEDEDEVEEDEDEDEDVDVPMYEESNWVSYDSPPASGVDSSRKISQRSFDANATNEYSDETSGCSEDTGGQTCHQCQRNDRDQVTWCLRCDRRGYCDSCISTWYSDISLDEIQRICPACRGICNCKICLRSDNSIKIKVRIREIPVLDKLQYLHLLLSSVLPVVKQIHREQCFEVELEKKLRDLPRTKLNADDLMCCNLCRIPITDYHRRCPSCSYDLCLNCCRDLREATVDHNKEPQTEQVKSSDQNILSKFPHWRSNDNGSIPCPPKEYGGCGCSSLNLSRIFKMNWVAKLVKNVEEMVSGCRISNGDGPPETGLNGIRLCQYSQRDASNDNYLYCPASEDLKTDGIINFRKHWKTGEPIIVKQVFDRSSISCWDPMVIWRGIQETTDEKMKDENRIVKAIDCFDWSEIDIELGQFMKGYSEGRFHENGWPQILKLKDWPSPSASEEFLLFQRPEFISKLPLLQYIHSKWGLLNVAAKLPHYSLQNDVGPKIYISYGISDELGRGDSVTNLHFNMRDMVYLLVHTSEVKLKDWQKTKIEMLQKAYKESEAKESCGDPQICLRGSSPDSLLKTKNNGLNLDSNQNKPIMDQGFEIYSSAEGNRVDGDLPFRQNGDASEKTRPGVLWDVFRRQDVPKVTEYLKMHRKEFGKQDIVNEFVTWPLYDGDIFLDRHHKRKLKEEFGVEPWSFEQNFGEAVFVPAGCPFQARNVQSTVQLGFDFLSPESLGEAVRLAEEVRRLPNEHEAKLQVLEVGKISLYAASSAIKEVQKLVLDPKLGAEIGYGDPNLTAMVSENYEKMVKRRQITCA 964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3792g00031 964 Gene3D Cupin 490 903 - -
Gabi3792g00031 964 MobiDBLite consensus disorder prediction 142 178 - -
Gabi3792g00031 964 SMART cupin_9 608 894 IPR003347 -
Gabi3792g00031 964 MobiDBLite consensus disorder prediction 186 230 - -
Gabi3792g00031 964 Pfam JmjC domain, hydroxylase 782 876 IPR003347 -
Gabi3792g00031 964 MobiDBLite consensus disorder prediction 70 86 - -
Gabi3792g00031 964 MobiDBLite consensus disorder prediction 57 230 - -
Gabi3792g00031 964 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 20 928 IPR045109 GO:0032454|GO:0033169
Gabi3792g00031 964 SUPERFAMILY Clavaminate synthase-like 510 903 - -
Gabi3792g00031 964 MobiDBLite consensus disorder prediction 1 24 - -
Gabi3792g00031 964 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 225 292 IPR018866 -
Gabi3792g00031 964 ProSiteProfiles JmjC domain profile. 601 894 IPR003347 -
Gabi3792g00031 964 MobiDBLite consensus disorder prediction 126 141 - -
Gabi3792g00031 964 MobiDBLite consensus disorder prediction 89 124 - -
Gabi3792g00031 964 ProSiteProfiles Zinc finger RING-type profile. 230 277 IPR001841 -
Gabi3792g00031 964 Pfam WRC 19 59 IPR014977 -
Gabi3792g00031 964 ProSiteProfiles WRC domain profile. 18 62 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3792g00031 Gabi-Chr3792 322604 329616 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3792g00031 19 59 GRF Transcription Factor Family AT3G13960 46.341 3.32e-06 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Gabi3792g00031 JmjC 6.9e-07 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3792g00031 K15601 - gmx:100801287 1530