Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3792g00030 ATGGATCACACAAGATCGACCTCAGGGAATAACGGTGAGGAAAATGGAGGGATTCCAGATGATTTGCGGTGCAAGAGATCCGATGGGAAACAATGGAGATGCACGGCGATGTCGATGCCTGACAAGACGGTGTGCGAGAAGCACTACATTCAGGCTAAGAAGAGAGCTGCGAATTCTGCAATGAGGGCTAACCTAAAGAAAGCAAAGAGGAAGTCACTGTCACTGGGAGAGTCTGATATTTATTTGGAGAGCAAGAGTGACGATTTCGATGTGCCACTTTCCACCACCATCAACAACAGCCACAACAACCACTCTGGGAAGAAGTTATTGAGTAGGGTTTCCAAGAACCAGTTTCGTTATACCCCCGAGCCTGACACTAAAAGGGCTTCCTCCGCCCGCCGTGCTCCCAAGCCAAATGATGATTCGCCAGATGAGGATGAAGATGAAGATGAAGATGAAGATGAGGATGAAGATGAGGATGAGGATGAGGTTGAGGAGGATGAGGATGAGGATGAGGATGTGGATGTCCCTATGTATGAAGAGAGTAATTGGGTGTCCTATGATTCGCCCCCGGCTTCTGGGGTCGATTCCTCCAGGAAAATATCGCAGAGGAGCTTCGATGCTAATGCTACAAATGAATATTCTGATGAAACCTCCGGTTGTTCTGAAGACACTGGTGGGCAAACTTGCCATCAATGCCAGAGGAATGACAGAGACCAAGTTACTTGGTGCCTCCGGTGTGATAGAAGAGGATACTGTGATAGCTGTATATCAACATGGTACTCGGACATTTCATTGGATGAAATTCAGAGGATATGTCCTGCATGCCGTGGCATATGTAATTGCAAAATTTGCTTACGTAGTGATAATTCAATAAAGGTTCGGATACGTGAGATACCTGTTCTAGATAAGTTACAGTATCTCCACTTGCTGCTGTCATCAGTGCTTCCTGTAGTAAAGCAGATCCATCGTGAACAGTGTTTTGAAGTTGAACTTGAAAAGAAGTTGCGTGGTGCTGAAATAGATCTTCCCAGGACAAAATTGAATGCAGATGATTTGATGTGCTGCAATTTATGTAGGATACCTATTACTGATTATCATCGACGCTGTCCAAGTTGCTCATATGATTTGTGTCTTAATTGTTGTCGGGATCTTCGAGAAGCAACTGTAGATCACAATAAAGAACCCCAAACAGAGCAAGTAAAATCTTCTGATCAAAACATATTAAGCAAGTTTCCTCATTGGAGATCCAATGACAATGGAAGTATTCCATGCCCCCCAAAGGAGTATGGTGGCTGTGGTTGTTCATCATTAAATCTAAGCCGGATTTTCAAGATGAATTGGGTTGCAAAGTTGGTGAAAAATGTAGAGGAAATGGTTAGTGGCTGCAGAATTAGTAATGGAGATGGTCCACCAGAAACTGGGTTGAATGGTATCAGACTTTGCCAATATTCTCAAAGAGACGCTAGTAATGATAATTATCTTTATTGTCCTGCATCTGAGGATCTCAAAACTGATGGGATTATCAATTTTAGAAAGCACTGGAAAACTGGTGAGCCCATTATTGTCAAGCAAGTATTTGATAGGTCATCCATTTCATGTTGGGATCCAATGGTCATATGGAGAGGGATTCAAGAGACAACAGATGAGAAAATGAAAGACGAAAACAGAATAGTTAAGGCCATAGATTGTTTTGATTGGTCTGAGATTGATATTGAGCTTGGTCAGTTCATGAAAGGATACTCTGAGGGTCGTTTTCATGAAAATGGTTGGCCACAAATATTGAAGTTGAAGGACTGGCCTTCACCTAGTGCATCTGAAGAATTTCTATTGTTCCAAAGACCTGAATTTATCAGCAAACTGCCTTTACTTCAGTATATTCACTCCAAGTGGGGCCTTCTTAATGTTGCGGCTAAATTGCCTCATTACTCCTTGCAGAATGATGTAGGACCCAAGATTTATATATCTTATGGGATTAGTGATGAACTTGGTAGAGGTGATTCAGTGACAAATCTCCATTTCAATATGCGTGACATGGTCTACCTTTTGGTCCATACTAGTGAAGTGAAGTTGAAGGACTGGCAGAAAACTAAAATTGAAATGCTACAAAAAGCTTATAAGGAATCTGAGGCGAAAGAATCGTGTGGGGATCCACAAATATGTTTGAGGGGGAGTTCACCTGATTCCTTGCTTAAAACAAAAAATAATGGACTGAACTTGGATTCAAACCAGAATAAGCCAATTATGGATCAAGGATTTGAAATTTATTCTAGCGCTGAAGGGAATAGGGTCGATGGCGACCTTCCATTCAGACAAAATGGAGATGCCTCTGAGAAAACACGTCCTGGAGTTCTTTGGGATGTCTTTCGTCGGCAGGATGTTCCCAAGGTGACTGAATATTTGAAAATGCATCGGAAGGAATTTGGGAAGCAAGACATAGTAAATGAATTTGTAACATGGCCTCTTTATGATGGAGATATTTTTCTTGACAGACACCATAAAAGAAAGTTGAAGGAAGAATTTGGAGTGGAGCCATGGTCATTTGAACAGAATTTTGGGGAAGCTGTATTTGTTCCTGCTGGGTGCCCTTTCCAAGCAAGGAATGTTCAGTCCACTGTTCAGTTGGGCTTTGATTTCTTATCTCCGGAAAGTTTGGGGGAGGCTGTGAGATTAGCAGAGGAAGTCCGCCGTCTACCTAATGAACATGAAGCAAAGCTTCAAGTATTGGAGGTTGGGAAGATATCTCTGTATGCGGCAAGTTCAGCCATCAAAGAAGTTCAGAAACTTGTACTTGACCCGAAACTTGGAGCAGAGATCGGATATGGAGACCCTAATTTGACTGCAATGGTTTCTGAGAATTATGAGAAGATGGTTAAGCGGAGGCAGATTACTTGTGCTTGA 2901 0.423 MDHTRSTSGNNGEENGGIPDDLRCKRSDGKQWRCTAMSMPDKTVCEKHYIQAKKRAANSAMRANLKKAKRKSLSLGESDIYLESKSDDFDVPLSTTINNSHNNHSGKKLLSRVSKNQFRYTPEPDTKRASSARRAPKPNDDSPDEDEDEDEDEDEDEDEDEDEVEEDEDEDEDVDVPMYEESNWVSYDSPPASGVDSSRKISQRSFDANATNEYSDETSGCSEDTGGQTCHQCQRNDRDQVTWCLRCDRRGYCDSCISTWYSDISLDEIQRICPACRGICNCKICLRSDNSIKVRIREIPVLDKLQYLHLLLSSVLPVVKQIHREQCFEVELEKKLRGAEIDLPRTKLNADDLMCCNLCRIPITDYHRRCPSCSYDLCLNCCRDLREATVDHNKEPQTEQVKSSDQNILSKFPHWRSNDNGSIPCPPKEYGGCGCSSLNLSRIFKMNWVAKLVKNVEEMVSGCRISNGDGPPETGLNGIRLCQYSQRDASNDNYLYCPASEDLKTDGIINFRKHWKTGEPIIVKQVFDRSSISCWDPMVIWRGIQETTDEKMKDENRIVKAIDCFDWSEIDIELGQFMKGYSEGRFHENGWPQILKLKDWPSPSASEEFLLFQRPEFISKLPLLQYIHSKWGLLNVAAKLPHYSLQNDVGPKIYISYGISDELGRGDSVTNLHFNMRDMVYLLVHTSEVKLKDWQKTKIEMLQKAYKESEAKESCGDPQICLRGSSPDSLLKTKNNGLNLDSNQNKPIMDQGFEIYSSAEGNRVDGDLPFRQNGDASEKTRPGVLWDVFRRQDVPKVTEYLKMHRKEFGKQDIVNEFVTWPLYDGDIFLDRHHKRKLKEEFGVEPWSFEQNFGEAVFVPAGCPFQARNVQSTVQLGFDFLSPESLGEAVRLAEEVRRLPNEHEAKLQVLEVGKISLYAASSAIKEVQKLVLDPKLGAEIGYGDPNLTAMVSENYEKMVKRRQITCA 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3792g00030 966 SMART cupin_9 610 896 IPR003347 -
Gabi3792g00030 966 MobiDBLite consensus disorder prediction 142 178 - -
Gabi3792g00030 966 Pfam JmjC domain, hydroxylase 784 878 IPR003347 -
Gabi3792g00030 966 Gene3D Cupin 492 905 - -
Gabi3792g00030 966 MobiDBLite consensus disorder prediction 186 230 - -
Gabi3792g00030 966 MobiDBLite consensus disorder prediction 70 86 - -
Gabi3792g00030 966 MobiDBLite consensus disorder prediction 57 230 - -
Gabi3792g00030 966 ProSiteProfiles JmjC domain profile. 603 896 IPR003347 -
Gabi3792g00030 966 MobiDBLite consensus disorder prediction 1 24 - -
Gabi3792g00030 966 SUPERFAMILY Clavaminate synthase-like 512 905 - -
Gabi3792g00030 966 MobiDBLite consensus disorder prediction 126 141 - -
Gabi3792g00030 966 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 225 290 IPR018866 -
Gabi3792g00030 966 MobiDBLite consensus disorder prediction 89 124 - -
Gabi3792g00030 966 ProSiteProfiles Zinc finger RING-type profile. 230 277 IPR001841 -
Gabi3792g00030 966 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 20 930 IPR045109 GO:0032454|GO:0033169
Gabi3792g00030 966 Pfam WRC 19 59 IPR014977 -
Gabi3792g00030 966 ProSiteProfiles WRC domain profile. 18 62 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3792g00030 Gabi-Chr3792 322604 329769 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3792g00030 19 59 GRF Transcription Factor Family AT3G13960 46.341 3.27e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Gabi3792g00030 JmjC 6.9e-07 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3792g00030 K15601 - gmx:100801287 1548.1