Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3792g00029 ATGACGGAAACACACGAAAACGCATCGAAAGAAACTGTGCGCGAATACGAAGAAGAAGCGGATGATCAAAGTTTCGAAGAGCTTGGATTGGACGCTCGCCTCATTCGTGCGTTACTCAAGAAGGGAATTGAGAAACCCACTCCAATTCAGCGCGTCGCGATTCCACTGATTCTTGAAGGCAAGGATGTGGTTGCTCGAGCAAAGACGGGTTCTGGGAAGACGTTCGCGTACCTTGTTCCGTTGCTTCAGAAATTGTTTACCGGTAATGTTGATAGGAAGAAGCTAGCACCTAACGCTTTTATTCTTGTACCAACTCGTGAACTATGTCAACAGGTGTATGCGGAGGTCTTATCACTCCTCGAGTTATGCAGGGTTCAACTGAAAGTTGTGCAGTTGAATAGCAATATGCTAGCTAATGACTTGAAAGCTGCAATGGCTGGACCCCCTGATGTTTTGATCTCCACTCCTGCTTGCATACCAAAGTGCTTGTCTGGCGGCATACTTCAGGCCGCATCGATTAGTGGTTCGCTTGAAACTCTAGTTCTTGATGAGGCAGATCTTCTATTATCATATGGGTATGAAAATGATATTAAAGCTTTTACACTTCACATACCCAGAAGTTGCCAGTGTCTTCTTATGTCTGCAACATCAAGTGCTGATGTTGACAAACTAAAGAAGTTGATTTTACACAACCCGTTTATTTTGACTTTGCCTGAAGTTGGAAATCATAAGGATGACATCATCCCTAAAAATGTTCAGCAGTTCTGGATCTCATGTACTGCCAATGATAAGTTACTCTACATCCTTGCTGTGTTGAAGTTGGAGTTGGTCCAAAAGAAAGTTCTGATATTCACTAACACCATAGACATGAGTTTCAGGTTGAAACTATTCTTGGAGAAGTTTGGTATCAAGTCCGCTGTTTTAAATGCTGAGTTGCCACAGAATTCTCGTCTCCATATTCTCGAGGAATTCAATGCTGGCCTGTTTGATTATCTAATTGCATCGGACGTCAGCCAGTCAAAAGAGAAAGATGAAGCACCTAAGGAAAGTAATGTTGGATCACGGAAGTCTAGAAAACAGGCTAAGCTAAAATTAGATTCTGAATTTGGAGTAGTAAGGGGAATTGACTTTAAGGATGTATACACGGTTATAAACTTTGAAATGCCTCGAAGTGTTGCAGGATACATACATCGAATTGGACGTACAGGAAGAGCATACAGTTCTGGTTCTTCTATCTCTCTGGTTTCTCCAGATGAGATGGATACTTTAGAAGAAATAACATCTTTCGTTGGGGATGATGAAAACAAGGGCTCAAACACAATTACTGAGTTTCCCTTTCTCACCAAGAATGCAGTTGAATCTTTACGGTATAGGGCTGAGGATGTTGCAAAAAGTGTAACTAAAATTGCTGTCCGAGAATCACGAGCCCAGGATTTGAGAAATGAAATTTTGAACTCTCAAAAATTGAAGGCCCACTTTGAAACTAATCCAAAAGACCTAGACCTGTTGAAACATGACAAAGTTTTGAGCAAGAATGCCCCTCCTTCCCACCTACGTGACGTGCCTGACTACCTATTAGACAAAACAACGAAAGAGGCTAGGGAAATGGTCAAGCTTACAAGAGATGCAATGGGAAATAATAACCGCCGCAGGGGATCCAAGAGAAAATTTAGAAAAGGTGGAGACCCTCTGAAGGCCATCTCTGCTGCGGGATCAAAAAGACCGCACAAAGTTGTTAAGAAGACTGGTGCAAGCAATAGCAATAGCAGTAGCAGTGATAGACATAAACACAAAAAGATAAAAGCTATTTGA 1812 0.4189 MTETHENASKETVREYEEEADDQSFEELGLDARLIRALLKKGIEKPTPIQRVAIPLILEGKDVVARAKTGSGKTFAYLVPLLQKLFTGNVDRKKLAPNAFILVPTRELCQQVYAEVLSLLELCRVQLKVVQLNSNMLANDLKAAMAGPPDVLISTPACIPKCLSGGILQAASISGSLETLVLDEADLLLSYGYENDIKAFTLHIPRSCQCLLMSATSSADVDKLKKLILHNPFILTLPEVGNHKDDIIPKNVQQFWISCTANDKLLYILAVLKLELVQKKVLIFTNTIDMSFRLKLFLEKFGIKSAVLNAELPQNSRLHILEEFNAGLFDYLIASDVSQSKEKDEAPKESNVGSRKSRKQAKLKLDSEFGVVRGIDFKDVYTVINFEMPRSVAGYIHRIGRTGRAYSSGSSISLVSPDEMDTLEEITSFVGDDENKGSNTITEFPFLTKNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSQKLKAHFETNPKDLDLLKHDKVLSKNAPPSHLRDVPDYLLDKTTKEAREMVKLTRDAMGNNNRRRGSKRKFRKGGDPLKAISAAGSKRPHKVVKKTGASNSNSSSSDRHKHKKIKAI 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3792g00029 603 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 23 51 IPR014014 GO:0003724
Gabi3792g00029 603 Pfam DEAD/DEAH box helicase 47 224 IPR011545 GO:0003676|GO:0005524
Gabi3792g00029 603 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 247 431 IPR027417 -
Gabi3792g00029 603 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 236 IPR027417 -
Gabi3792g00029 603 MobiDBLite consensus disorder prediction 1 17 - -
Gabi3792g00029 603 SMART ultradead3 42 255 IPR014001 -
Gabi3792g00029 603 CDD SF2_C_DEAD 252 405 - -
Gabi3792g00029 603 MobiDBLite consensus disorder prediction 541 603 - -
Gabi3792g00029 603 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 264 452 IPR001650 -
Gabi3792g00029 603 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 54 235 IPR014001 -
Gabi3792g00029 603 MobiDBLite consensus disorder prediction 1 21 - -
Gabi3792g00029 603 Pfam Helicase conserved C-terminal domain 263 406 IPR001650 -
Gabi3792g00029 603 SMART helicmild6 292 406 IPR001650 -
Gabi3792g00029 603 PANTHER RNA HELICASE 12 528 - -
Gabi3792g00029 603 Gene3D - 241 445 IPR027417 -
Gabi3792g00029 603 Gene3D - 1 237 IPR027417 -
Gabi3792g00029 603 CDD DEADc_DDX56 30 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3792g00029 Gabi-Chr3792 308264 313872 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3792g00029 24 446 Eukaryotic Initiation Factors Gene Family AT3G19760 25.768 2.35e-35 136