Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3792g00021 ATGGATGATGGCAACAACAACAACAAAACATCTTCCGACCAAGTCATTGCAGAAATGGTCGAAATGGGTTTCGAGTATTCCAATATTCTAGAAGCCATAAAAGTAGTGGGTCCATCTATTACCAGCGCTGTGGAGCATATCTTGAATAGAACTAGCTCTGAAGCTGAAACATCCACTACCCACAATTCCAAAATTCACACACATCATGGGAAGCCTCTCAAAAAACGAGCTTTGCCCTTGTCCCGTCAGGTTCGACAATCGAGGATACTCGAGCATTTCCAATCCACTGATAAAGTCACAGAGAGTAAGAACAAGAACAATGATCTAGTTGTTGATGTGGAAGAGCACAAGGACTTCAAGGAGCACAATGATGTACTTGTAGCTGAGTATTTGGATATTGAATCTGATTGGGAGCAAAGAGCTAGTAACCTCTTGCAAAAGCATTTTGGTTTTTCATCCTTGAAATTTTTTCAGAAGGAAGCTCTTGCTACTTGGGTTGCTCATAGAGACTGTCTTGTCCTGGCTGCAACAGGATCTGGGAAATCTCTGTGCTTTCAAATTCCTGCTTTATTAACTGGGAAAGTGGTGGTTGTGATTTCTCCCTTAATAAGCCTGATGCATGACCAATGCTTAAATCTAGCAAGACATGGAATCAGTGCTTGCTTTCTTGGGTCTGGGCAACCTGACAATACTGTTGAACAGAAAGCAATGAGAGGCATGTATAGTGTAATTTATGTTTGTCCAGAGACAGTCCTAAGATTGATTGAACCACTGCAGAAGCTTGCAGAAAGTCGTGGCATTGCTTTATTCGCAATTGATGAGGTGCATTGTGTTTCCAAATGGGGTCATGATTTCCGTCCAGACTACAGCCGACTGTCTGTGCTGAGGGAAAATTTCAGTACTAGCAAGCTAAAATCCCTGAAATTTGATATACCACTGATGGCCTTGACAGCTACAGCTACAAACAGAGTTCGAGAAGACATTTTAAAATCACTATGCATGTCAAAAGAAACAAAAATTGTTCTTACATCATTTTTTCGTTCTAATTTACGCTTCATGGTAAAGCATAGTGGAACATCACCGGCTTCTTATGAGAAAGATTTCCATGAATTGATTAAAGTATATAGTAGAAAGCAAAATATTGATGGAAATGATTCAGATCATATTTCCAATAGCCCTGATGCTAGTAGAATCTTTGATACAGACAGTGTTTCTCCTTATGATGTGGATGACAATGAAGATGATTATGCTGATAGAGATACTAATGTAATACATTCAGGAAACACAGACAATATTATAAAAGGAAAAGAATTGTCAGTTGAGTTCCTGGAAAATGACGTTGATGTCTTTCCAAGTGTGGATGACTGGGATGTTACCTGTGGTGAATTTTGTGTACAACCTCCTGCCAAGGATTGGGTGTTATCCGAGACAATTGATCCACCTAAGAAACCAGAAGGGAGACTGAAAATGCTTAAAGATCCTTTGGAACAAGGACCAACAATTATATATGTACCCACCAGAAAAGAAACGCTGAGAATTGCAAAGTATCTATGCAAGTTTGGTGTGAAGGCTGCTGCTTATAATGCAGGGCTGCCCAAATTGCATCTGAGAAGGATTCATAAAGAGTTTCATGAAAATACTTTAGAGGTTGTTGTTGCAACAATAGCATTTGGAATGGGAATTGACAAATCGAATGTCAGAAGAATCATCCACTATGGTTGGCCACAGAGTTTGGAAGCCTACTACCAAGAAGCTGGTCGGGCTGGTCGAGATGGGAAACTAGCAGATTGCATTCTGTATGCAAACCTAGCGAGAATACCATCTCTTTTGCCAAGTCGTAGAAGTGAAGATCAGACAAAACAAGCATATATCATGTTGTCTGATTGTTTCAGATATGGAATGAATACTTCATGTTGTCGAGCAAAGACACTTGTGGAGTACTTTGGAGAGGATTTCAGTCATCAGAAATGTCGCTTATGTGATGTCTGCATTGAAGGACCACCTGAAAGGCAGAATCTAAAAGAGGAGGCTTGTATTTTACTGCAAACTATAGGTGCCCATAATGCATGTAGGTTTTCCATGGATTGTTCATATGATGATGATATACGTGTCGACTCCAAAGATAGAAGACTAGGAGAGAGGCCAAGTCTTAAGATGTTAGTTGGAAAGATAAGGGAACAGTTTCAAAAGTTTTTAACCACTGATATATTATGGTGGAGAGGTCTTGCTCGAATTTTGGAAGTTAAAGGATACATCAGGGAGGGAGATGACAAGACCCATGTTCAGATAAAATACCCGGAGCCAACAGAATTGGGATTGAAATTTGTGAAGTCCATGAGTGAGCAAGCTTTCTATGTTTACCCTGAGGCAGATATGTTGCTTGCAAGTAAAACTCGCAAATCATATTCGTCATTCTCAGAATGGGGAAAAGGTTGGGCTGATCCTGAGATTCGTCGCCAGCGCCTGGAAAGAATGCAAGTCAATAGAAAGCCAAGGATGCTGCAAAGTCCCAAAAAGCAACGAAAGAGAAAAGCTAAGAAAGTGCAACCTGATTTGAGGACTTCTCGAGGTAGATTGGCAGCAAAACTCTCAAAATATAAGTGA 2604 0.4028 MDDGNNNNKTSSDQVIAEMVEMGFEYSNILEAIKVVGPSITSAVEHILNRTSSEAETSTTHNSKIHTHHGKPLKKRALPLSRQVRQSRILEHFQSTDKVTESKNKNNDLVVDVEEHKDFKEHNDVLVAEYLDIESDWEQRASNLLQKHFGFSSLKFFQKEALATWVAHRDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCLNLARHGISACFLGSGQPDNTVEQKAMRGMYSVIYVCPETVLRLIEPLQKLAESRGIALFAIDEVHCVSKWGHDFRPDYSRLSVLRENFSTSKLKSLKFDIPLMALTATATNRVREDILKSLCMSKETKIVLTSFFRSNLRFMVKHSGTSPASYEKDFHELIKVYSRKQNIDGNDSDHISNSPDASRIFDTDSVSPYDVDDNEDDYADRDTNVIHSGNTDNIIKGKELSVEFLENDVDVFPSVDDWDVTCGEFCVQPPAKDWVLSETIDPPKKPEGRLKMLKDPLEQGPTIIYVPTRKETLRIAKYLCKFGVKAAAYNAGLPKLHLRRIHKEFHENTLEVVVATIAFGMGIDKSNVRRIIHYGWPQSLEAYYQEAGRAGRDGKLADCILYANLARIPSLLPSRRSEDQTKQAYIMLSDCFRYGMNTSCCRAKTLVEYFGEDFSHQKCRLCDVCIEGPPERQNLKEEACILLQTIGAHNACRFSMDCSYDDDIRVDSKDRRLGERPSLKMLVGKIREQFQKFLTTDILWWRGLARILEVKGYIREGDDKTHVQIKYPEPTELGLKFVKSMSEQAFYVYPEADMLLASKTRKSYSSFSEWGKGWADPEIRRQRLERMQVNRKPRMLQSPKKQRKRKAKKVQPDLRTSRGRLAAKLSKYK 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3792g00021 867 FunFam ATP-dependent DNA helicase 474 601 - -
Gabi3792g00021 867 Gene3D - 604 785 IPR036388 -
Gabi3792g00021 867 MobiDBLite consensus disorder prediction 383 404 - -
Gabi3792g00021 867 FunFam ATP-dependent DNA helicase 603 781 - -
Gabi3792g00021 867 Pfam DEAD/DEAH box helicase 158 324 IPR011545 GO:0003676|GO:0005524
Gabi3792g00021 867 Gene3D - 110 346 IPR027417 -
Gabi3792g00021 867 SMART ultradead3 150 355 IPR014001 -
Gabi3792g00021 867 MobiDBLite consensus disorder prediction 823 867 - -
Gabi3792g00021 867 NCBIfam RecQ family ATP-dependent DNA helicase 144 373 IPR004589 GO:0004386|GO:0006310
Gabi3792g00021 867 MobiDBLite consensus disorder prediction 385 399 - -
Gabi3792g00021 867 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 162 338 IPR014001 -
Gabi3792g00021 867 Pfam RecQ zinc-binding 613 663 IPR032284 -
Gabi3792g00021 867 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 603 IPR027417 -
Gabi3792g00021 867 MobiDBLite consensus disorder prediction 51 74 - -
Gabi3792g00021 867 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 100 211 IPR027417 -
Gabi3792g00021 867 Gene3D - 475 601 IPR027417 -
Gabi3792g00021 867 CDD DEXHc_RecQ 145 345 - -
Gabi3792g00021 867 SUPERFAMILY UBA-like 10 50 IPR009060 GO:0005515
Gabi3792g00021 867 SMART helicmild6 511 592 IPR001650 -
Gabi3792g00021 867 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 487 645 IPR001650 -
Gabi3792g00021 867 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 10 50 IPR015940 -
Gabi3792g00021 867 FunFam ATP-dependent DNA helicase 123 346 - -
Gabi3792g00021 867 Pfam Helicase conserved C-terminal domain 488 591 IPR001650 -
Gabi3792g00021 867 MobiDBLite consensus disorder prediction 834 849 - -
Gabi3792g00021 867 PANTHER DNA HELICASE RECQ FAMILY MEMBER 133 800 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3792g00021 Gabi-Chr3792 242936 248880 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3792g00021 487 592 Eukaryotic Initiation Factors Gene Family AT5G11170 29.245 1.40e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3792g00021 K10900 - gmx:100793222 1342.02