Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3792g00020 ATGGATGATGCCAACAGCAACAACAACATATCTTCCGACCAAGTCATTGCAGAAATGGTCGAAAGGGGTTTCGAGTATTCCAATATTCTGGAAGCCATAAAAGTAAAGGGTCCATCTATTACCAGCGCTGAGGAGCATATCTTGAATAGAACTAGCTCTGAAGCAGAAACATCCACTACCCACATTTCCAAAATTCTTGCACATAATGGGAAGCCTCTCAAAAAACGAGCTTTGCCCTTGTCCCGTCAAGTTCGAAAATCGAAGAGACTCAAGCATTTCCAATCCACTGATAAAATCACAATGAACAAAGATTTGGATATTGAATCTGATTGGGAGCAAAGAGCTAGCAACCTCTTGCAAAAGCATTTTGGTTTTTCATCCTTGAAAAATTTCCAGAAGGAAGCTCTTGCTGCTTGGGTTGCTCATAGAGACTGTCTTGTTCTGGCTGCAACAGGATCTGGGAAATCTCTGTGCTTTCAGATTCCTGCTTTATTAACTGGGAAAGTGGTGGTAGTGATTTCTCCCTTAATAAGCCTGATGAATGACCAATGCTTAAAGCTAGCAAGACATGGAGTCAGTGCTTGCTTTCTTGGGTCTGGGCAACTTGACGATACTGTTGAACTGAAAGCAATGAGAGGCATGTATAGTGTAATATATGTTTGCCCAGAGACAGTCCTAAGATTGATTGAACCACTGCAGAAGCTTGCAGAAAGTCGTGGCATTGCTTTATTCGCAATTGATGAGGCACATTGTGTTTCCAAATGGGGTCATGATTTCCGTCCAAACTACAGCCGACTGTCTGTCCTGAGGGAAAATTTCAGTACTAGCAAGCTAAAATCCCTGAAATTTGATATACCTCTGATGGCCTTGACAGCTACAGCTACAAACACAGTTCGAGAAGACATTTTAAAATCACTATGCATGTCAAAAGAAACAAATGTTGTTCTTACATCATTTTTTCGATCTAATTTACGCTTCATGGTAAAGCATAGTGGAACATCACCGGCTTCTTATGAGAAAGATTTTCATGAATTGATTAAAGTATACGGTAGAAAGAAAAATATTGATGGAAATGATTTTATAAATGCAGTTGCCTGTGATGAATTTTGTGTACAACCTCCTGCCCAGGAATGGGTATTATCCGAGACAATTGATCTACCTAAGAAACCAGAAGGGACACTCAAAATGCTTAAAGAGCCTTTGGAACAAGGACCAACAATTATATATGTACCCACCAGAAACGAAACGCTGATAATTGCAAAGTATCTAAGCAAGTTTGGTGTAAAGGCTGCTGCTTATAATGCAGGGCTGCCCCAATTGGATCTAAGAAGAATTCATAAAGAGTTTCATGAAAATACTTTAGAGGTAGTTGTTGCAACAATAGCATTTGGAATGGGAATTGACAAATCGAATGTCAGAAGAATCATTCACTATGGTTGGCCACAGAGTTTGGAAGCCTACTACCAAGAAGCTGGTCGGGCTGGTCGAGATGGGAAACTAGCAGATTGCATTCTGTATGCAAACCTAGCGAGCATACCATTTCTTTTGCCAAGTCGTAGAAGTGAAGATCAGACAAAACAAGCATATATCATGTTGTCTGATTGTTTCAGATATGGAATGAATACTTCATGTTGTCGAGCAAAGACCCTTGTGGAGTACTTTGGAGAGGATTTCAGTAATCAGAAATGTCTCTTATGTGATGTGTGCATTAATGGACCACCTGAAAGGCAGAATCTGAAAGAGGAGGCCTGTAATTTACTGCAAACTATAGGTGCCCATAATGCATGTAGGTTTTCCATGGATTGCTCATCTGTTGATGATATACATTTCAACTCCAAAGATGGAAGACTAAGAGAAAGGCCAGGTCTTAAGATGTTAGTTGGAAAGATACGGGATCAGTTTGAAAAGTTTTTAACCACTGATATATTATGGTGGAGAGGTCTTGCTCGAATTTTGGAAGTTAAAGGATACATCAGGGAGGGAGATGACAAGACCCATGTTCAGATAAAATACCCGGAGCCAACAGAATTGGGATTGAAATTTGTGAAGTCCATGAGGGAGCAAGCTTTCTATGTTTACCCTGAGGCAGATATGTTGCTTGCAAGTAAAACTAGCAAATCTATGTTCTCAGAATGGGGAGATGGTTTGGCTGATCCTGAGATCCGTCGCCAGCGCCCGGAAAGAATGCAAGTCAATAGAAAGCCAAGGATGCTGCAAAGCCCCAAAAAGCAACAAAAGAGAAAAGCTAAGAAAGTGCAACCTGATTTGACGACTCCTCGAGGTAGATTGGCTGCAAAACTCTCAAAATATAAGTGA 2316 0.4063 MDDANSNNNISSDQVIAEMVERGFEYSNILEAIKVKGPSITSAEEHILNRTSSEAETSTTHISKILAHNGKPLKKRALPLSRQVRKSKRLKHFQSTDKITMNKDLDIESDWEQRASNLLQKHFGFSSLKNFQKEALAAWVAHRDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMNDQCLKLARHGVSACFLGSGQLDDTVELKAMRGMYSVIYVCPETVLRLIEPLQKLAESRGIALFAIDEAHCVSKWGHDFRPNYSRLSVLRENFSTSKLKSLKFDIPLMALTATATNTVREDILKSLCMSKETNVVLTSFFRSNLRFMVKHSGTSPASYEKDFHELIKVYGRKKNIDGNDFINAVACDEFCVQPPAQEWVLSETIDLPKKPEGTLKMLKEPLEQGPTIIYVPTRNETLIIAKYLSKFGVKAAAYNAGLPQLDLRRIHKEFHENTLEVVVATIAFGMGIDKSNVRRIIHYGWPQSLEAYYQEAGRAGRDGKLADCILYANLASIPFLLPSRRSEDQTKQAYIMLSDCFRYGMNTSCCRAKTLVEYFGEDFSNQKCLLCDVCINGPPERQNLKEEACNLLQTIGAHNACRFSMDCSSVDDIHFNSKDGRLRERPGLKMLVGKIRDQFEKFLTTDILWWRGLARILEVKGYIREGDDKTHVQIKYPEPTELGLKFVKSMREQAFYVYPEADMLLASKTSKSMFSEWGDGLADPEIRRQRPERMQVNRKPRMLQSPKKQQKRKAKKVQPDLTTPRGRLAAKLSKYK 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3792g00020 771 PANTHER DNA HELICASE RECQ FAMILY MEMBER 107 686 - -
Gabi3792g00020 771 MobiDBLite consensus disorder prediction 719 771 - -
Gabi3792g00020 771 Gene3D - 381 507 IPR027417 -
Gabi3792g00020 771 SMART ultradead3 124 329 IPR014001 -
Gabi3792g00020 771 Pfam RecQ zinc-binding 519 569 IPR032284 -
Gabi3792g00020 771 Gene3D - 513 692 IPR036388 -
Gabi3792g00020 771 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 9 50 IPR015940 -
Gabi3792g00020 771 NCBIfam RecQ family ATP-dependent DNA helicase 118 345 IPR004589 GO:0004386|GO:0006310
Gabi3792g00020 771 FunFam ATP-dependent DNA helicase 380 507 - -
Gabi3792g00020 771 Pfam DEAD/DEAH box helicase 131 299 IPR011545 GO:0003676|GO:0005524
Gabi3792g00020 771 FunFam ATP-dependent DNA helicase 97 320 - -
Gabi3792g00020 771 SMART helicmild6 417 498 IPR001650 -
Gabi3792g00020 771 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 167 513 IPR027417 -
Gabi3792g00020 771 Pfam Helicase conserved C-terminal domain 389 497 IPR001650 -
Gabi3792g00020 771 CDD DEXHc_RecQ 119 319 - -
Gabi3792g00020 771 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 136 312 IPR014001 -
Gabi3792g00020 771 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 393 551 IPR001650 -
Gabi3792g00020 771 FunFam ATP-dependent DNA helicase 509 687 - -
Gabi3792g00020 771 Gene3D - 84 320 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3792g00020 Gabi-Chr3792 228913 235073 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3792g00020 394 511 Eukaryotic Initiation Factors Gene Family AT5G11170 28.814 1.26e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3792g00020 K10900 - tcc:18600464 922.539