Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3792g00011 ATGTTCGATGGAGTACCAGACCAGTTCCATCAATTCATAACTCCAAGGACCTCACTACCTCTTCACTTACCCTTCCCTCTACATGCTTCTGCAACCCCAAGTAACTTTCCTACTTTTGATCCTTATAACCCTTCTCATCATCAATTGCCACTCCAACACAATCTCTTGCACCCATTACAACACCACTCTTCTACCCACAAACATGAAGAAGAGAAGGAAGAAAACAGTACAGTGTCAATGAGCTTAGAAATTCAAAGAGATCAAGCACAGTTACCCGAGCTGATTGATCCTTGGAGTAACGACGAAGTGCTTGCACTGTTAAGGATCAGATCTAGCATGGAGAGTTGGTTCCCAGAGCTCACTTGGGAACATGTCTCAAGGAAGTTAGCAGAGCTTGGTTATAAGAGGAGTGCAGAGAAGTGCAAGGAGAAGTTTGAAGAAGAAAGTAGATACTTCAACAACATTAATTACAACAAGAGTTATCGGTTTCTCAGTGAGCTTGAAGAGCTTTATCAAGGTGATCAAAACCCTGATCAAGTTGGGAGTGAAAAGCCAAGCGAGGGACAAGACAAGAATATGGGTCATCATCATCATCATCATCATGCATTAATGGAAGAGGATTCATCGAGAAACATTAATATTGACGGATCAGTGACCAAACAAAACGAGCAAAGTGGTTTGGAAAAAACAAAGGACCGGAGTAAGAGGAAGAGGCCTGATAGGTTTGAGATTTTCAAGGGTTTTTGTGAGAGTATTGTCCACACCATGATGGCTCAACAAGAAGAGATGCACAACAAGCTCCTTCAGGATATGCTGAAAAGGGATGAAGAGAAGTTTACAAGAGAGGAAGCTTGGAAGAAGCAAGAGATGGATAAAATGAACAAGGAGCTTGAGATGATGGCAAGGGAACAAGCTATTGCTGGTGATAGACAAACCAACATAATTGAATTCTTGAAGAAATTTTCTGAAAGTTCGTCTGCAAGTCATAGCTTTGGAGGAGGAAATGGAAAAGACAAAAACAAGGTAACAAAAGATTCAAACACAAATACCCGCATTATTACTTCTTCCCCATTGCATTCTCAAAACCCTAATAATCCTTCTTCTGCTGGCGAGAAAAGTCTTCAGTCAACACCTTCTTCTACTATGATTCTAAATCAAGCTTTAACCACTACATGTTATGCACTCTCAGCTGAAAACCCTAGCTCAAGTCTTGCCCAAGATAAATCACAAGTTCCTTCTTCTTCAACTTCAGCCCCAGTTCCCCAGAACCCTAGTTCTTCACTAAATTTTCCGAATAATAATCCATTAGAGACAAGTTCAATTGCTAATAAGGCCTCCTCAAACCTTACATCCACAACTGAGAAAGACGATGTTGGAAGAAGATGGCCAAAAGACGAAGTGTTAGCACTGATAAACCTCAGGTGCAGTAGTCTTAATAACAACAATGAAGAGAAGGAAGGAAACAAGGCTCCTCTATGGGAGAGAATCTCACAAAGGATGTTGGAGTTGGGATACAAAAGAAGTGCAAAGAGATGCAAAGAGAAGTGGGAGAACATAAACAAGTACTTCAGAAAAACCAAGGATGTGAATAGGAAGAGATCCCTCGATTCTAGAACTTGTCCTTACTTCAATCAACTGAGCAATCTTTATAATCAAGGAAAACTTGTTCTACAATCTGAAAGCCACTTGAATAATCCACCAGCGAATCCTGGCCAAGTAGTGTCACCAGATCAAACCCAAGCTCATGAGTTTTCTCAAGTGGGGTCTGGTGGTCTCAGTATGCAGGTTGATCATGGAGGTGAGAAAACTTTGATGCAAGTACCTTCTTTGGATTTTGATCAGTTTTAA 1848 0.4085 MFDGVPDQFHQFITPRTSLPLHLPFPLHASATPSNFPTFDPYNPSHHQLPLQHNLLHPLQHHSSTHKHEEEKEENSTVSMSLEIQRDQAQLPELIDPWSNDEVLALLRIRSSMESWFPELTWEHVSRKLAELGYKRSAEKCKEKFEEESRYFNNINYNKSYRFLSELEELYQGDQNPDQVGSEKPSEGQDKNMGHHHHHHHALMEEDSSRNINIDGSVTKQNEQSGLEKTKDRSKRKRPDRFEIFKGFCESIVHTMMAQQEEMHNKLLQDMLKRDEEKFTREEAWKKQEMDKMNKELEMMAREQAIAGDRQTNIIEFLKKFSESSSASHSFGGGNGKDKNKVTKDSNTNTRIITSSPLHSQNPNNPSSAGEKSLQSTPSSTMILNQALTTTCYALSAENPSSSLAQDKSQVPSSSTSAPVPQNPSSSLNFPNNNPLETSSIANKASSNLTSTTEKDDVGRRWPKDEVLALINLRCSSLNNNNEEKEGNKAPLWERISQRMLELGYKRSAKRCKEKWENINKYFRKTKDVNRKRSLDSRTCPYFNQLSNLYNQGKLVLQSESHLNNPPANPGQVVSPDQTQAHEFSQVGSGGLSMQVDHGGEKTLMQVPSLDFDQF 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3792g00011 615 MobiDBLite consensus disorder prediction 346 379 - -
Gabi3792g00011 615 ProSiteProfiles Myb-like domain profile. 97 149 IPR001005 -
Gabi3792g00011 615 SMART sant 94 151 IPR001005 -
Gabi3792g00011 615 SMART sant 458 522 IPR001005 -
Gabi3792g00011 615 MobiDBLite consensus disorder prediction 61 80 - -
Gabi3792g00011 615 Pfam Myb/SANT-like DNA-binding domain 96 158 IPR044822 -
Gabi3792g00011 615 Pfam Myb/SANT-like DNA-binding domain 460 548 IPR044822 -
Gabi3792g00011 615 MobiDBLite consensus disorder prediction 401 453 - -
Gabi3792g00011 615 MobiDBLite consensus disorder prediction 325 379 - -
Gabi3792g00011 615 MobiDBLite consensus disorder prediction 401 460 - -
Gabi3792g00011 615 MobiDBLite consensus disorder prediction 217 236 - -
Gabi3792g00011 615 CDD GT1 460 527 - -
Gabi3792g00011 615 MobiDBLite consensus disorder prediction 174 209 - -
Gabi3792g00011 615 ProSiteProfiles Myb-like domain profile. 461 520 IPR001005 -
Gabi3792g00011 615 MobiDBLite consensus disorder prediction 62 77 - -
Gabi3792g00011 615 FunFam Trihelix transcription factor GTL2 462 525 - -
Gabi3792g00011 615 MobiDBLite consensus disorder prediction 184 208 - -
Gabi3792g00011 615 FunFam Trihelix transcription factor GT-2 98 154 - -
Gabi3792g00011 615 PANTHER FI21293P1 62 590 - -
Gabi3792g00011 615 Gene3D - 98 154 - -
Gabi3792g00011 615 Gene3D - 462 525 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3792g00011 Gabi-Chr3792 108736 111278 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3792g00011 1 552 Trihelix Transcription Factor Family AT5G28300 38.328 7.76e-100 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Gabi3792g00011 Myb_DNA-bind_4 2.3e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3792g00011 - - gmx:100804367 714.916