Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3792g00010 ATGGAGCAATATGAAATACTTGAGCAAATTGGAAAAGGTGCTTTTGGTTCTGCGCTTCTTGTGAGACATAAGCATGAGAAGAAAAAATATGTGCTGAAGAAGATTCGCCTTGCCCGCCAAACTGAGCGTTCTCGTAGATCTGCACACCTGGAGATGGAGCTTATCTCTAAATTACGAAACCGATTTATTGTGGAGTATAAAGATTCATGGGTAGAAAAGGGTTGCTATGTCTGCATTATTATAGGTTATTGTGAAGGCGGAGATATGGCGGAAGCTATAAAGAAAGCTAATGGTGTTCTGTTTCCAGAGGAGAAGCTTTGTAAGTGGCTTGTTCAACTTCTTATGGCGCTTGATTACTTGCACATGAACCACATTCTTCATCGTGATGTCAAGTGTTCAAATATCTTCTTGACCAAAGATTATGACATACGTTTGGGTGATTTCGGACTAGCCAAAATGTTGACTTCTGATGATCTTGCTTCCTCTGTGGTGGGAACTCCTAGCTACATGTGCCCTGAGCTCCTTGCTGATATACCTTACGGTTCTAAATCGGATATTTGGTCCTTGGGATGTTGTATATATGAAATGACAGCAAATAAGCCTGCATTCAAAGCATTTGATATACAAGCTTTGATTAACAAGATTAATAAGTCTATAGTGGCTCCACTGCCAACAAAATATTCTAGTTCATTTCGAGGTCTTGTTAAAAGCATGCTGCGGAAAAATCCAGAGCTTAGGCCCAGTGCTTCAGAGTTGCTTGGGCATCCACATCTTCAACCTTATGTTCATAAGATCCATCTCAAAATCAATAGCCCCAGGCAAAGTACGTTACCAGTTCATTGGCCAGAATCCAACTTCATGAAGAAAACTAGATTTTTGGTGCCAGAAGATTATCCTGTTTCCATCTATAGGGATAAGCGTCATTCTTTAAGCAATGATCGGACTCTAAATCCTAGTGTATCTGGAGCTGATCAAGATTCTATATGCTCTACCCTAGAAATAGATTGTACTCCAGATCATTTGAATCAAAGGTTGGCAGAACTATGTATTGGAGATAGCCGTGAAGTGAAGTCAATCCATAAGCCTGTTATTTCCAGAACTTCTAGTATTGCTAGGACTCCAAGATTCTCTTCAACAAAAGTTTCTACCACCAACAAGAAATCAATGGAACCCTCAAAGAATCAAAAGGCTGCAAGGCGAGCTCTTCCTGTTTCACACAATACCTCAAAATCTGCCCAAACAAATCGCAGGGCATCATTTCCACTGCCAACAAGGGGTGGTATTCGGCAGCCTCCTTGCAGGACCAGTGTTGGTTTGCTGAGCCATGTGTCTTCGCCAGACATCTCGGTCAACTCTCCCCGTATTGATAAGATAGCTGAATTCCCATTGGCATCATATGAAGATTCATTATATCCTATCAATAGAACATCAACCTCTGCACAAGGTTCCTTAGGCTATCCATCTCAGGGCAATCATTCAACTGTGATAGACAAATGCACGGTAGAGGTATGTGATAGAGCCTCTATTAGGCCTAGTTCTAGGGATGATTGGCAGGGAATTAAGCGCAGCATGTTGAAGGAAGTTGATAAGGATAAAAGTGGTTCCTCTGATCAAAATGCAACAGCAGGTGCATCTAGCCGCACCTCTTCAGACTTGAACCGCCACCAGTTTGACACTTCATCATTCCAACAAAGGGCTGAAGCCTTAGAAGGGTTGCTTGAATTTAGTGCAAGATTGCTACTGCAGGCACGATACGATGAGCTTGGGGTTTTGTTGAAACCATTTGGGCCCGGGAAGGTTTCCCCAAGGGAAACTGCTATTTGGTTGAGCAAGAGCTTCAAAGAGAACACTATCAACCCGGAAGAATCCCCGTAA 1875 0.424 MEQYEILEQIGKGAFGSALLVRHKHEKKKYVLKKIRLARQTERSRRSAHLEMELISKLRNRFIVEYKDSWVEKGCYVCIIIGYCEGGDMAEAIKKANGVLFPEEKLCKWLVQLLMALDYLHMNHILHRDVKCSNIFLTKDYDIRLGDFGLAKMLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMTANKPAFKAFDIQALINKINKSIVAPLPTKYSSSFRGLVKSMLRKNPELRPSASELLGHPHLQPYVHKIHLKINSPRQSTLPVHWPESNFMKKTRFLVPEDYPVSIYRDKRHSLSNDRTLNPSVSGADQDSICSTLEIDCTPDHLNQRLAELCIGDSREVKSIHKPVISRTSSIARTPRFSSTKVSTTNKKSMEPSKNQKAARRALPVSHNTSKSAQTNRRASFPLPTRGGIRQPPCRTSVGLLSHVSSPDISVNSPRIDKIAEFPLASYEDSLYPINRTSTSAQGSLGYPSQGNHSTVIDKCTVEVCDRASIRPSSRDDWQGIKRSMLKEVDKDKSGSSDQNATAGASSRTSSDLNRHQFDTSSFQQRAEALEGLLEFSARLLLQARYDELGVLLKPFGPGKVSPRETAIWLSKSFKENTINPEESP 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3792g00010 624 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Gabi3792g00010 624 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3792g00010 624 MobiDBLite consensus disorder prediction 401 420 - -
Gabi3792g00010 624 MobiDBLite consensus disorder prediction 367 428 - -
Gabi3792g00010 624 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3792g00010 624 MobiDBLite consensus disorder prediction 367 391 - -
Gabi3792g00010 624 FunFam Serine/threonine-protein kinase Nek2 1 83 - -
Gabi3792g00010 624 MobiDBLite consensus disorder prediction 525 554 - -
Gabi3792g00010 624 SUPERFAMILY Protein kinase-like (PK-like) 1 305 IPR011009 -
Gabi3792g00010 624 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Gabi3792g00010 624 Gene3D Transferase(Phosphotransferase) domain 1 84 275 - -
Gabi3792g00010 624 CDD STKc_Nek 3 258 - -
Gabi3792g00010 624 FunFam Serine/threonine-protein kinase Nek3 86 332 - -
Gabi3792g00010 624 MobiDBLite consensus disorder prediction 535 554 - -
Gabi3792g00010 624 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Gabi3792g00010 624 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3792g00010 624 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 574 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3792g00010 Gabi-Chr3792 80481 86543 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3792g00010 10 259 MAP Kinase Kinase Kinase AT1G53570 31.765 1.43e-35 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Gabi3792g00010 Pkinase 5.4e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3792g00010 K08857 - gmx:100804898 1104.35