Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3791g00002 ATGGCTTCTTTCTCAATGCCGATTCTGGGTTTGAATGCTCAACGAGAGGAGATGCTTATGGTCTTTGATTCATCGGGCTTCGATTACAACCACAACATGCAAAGAAATATCAGATCTCGTAGTCGTGGAGAATTGGGTTACAATAACCACAACATGCAAAGCAGCAGGATCCAATCTCGTGTGGAATTGGGTTACAATAACCTCAACATGCAAAACAACGTTAGAGATGATGTTTACATCTTGGATTCGCTGGACTTGGGTTACAACCACAACATGCAAAACAATGTAAGAGAAAGGGTTTATGTCTTTAATTCTGTCGATTTGGATGGTGGAGTTTCAAGGGTAATGGAGTCCACGACACAAGATCTTGAAGAGGTCACAGTTGAAGCAGAGTCCACAACAACACAAGACTCTAGATCTTTTCAAAATCTTGAAGAGGTCACGATTGAAGCAGAGTCTTCTTCCATCACCGACTGTTCTATTTGTCTCGGGGAGATTGGTTCAAGTGCAATTGGCTTGCCTTGTTCACACGTGTTTCATCGGGATTGCATCACTAAGTGGCTCATGCTTCGCAATTCATGTCCTTTATGTAGATGCAGTGTGTCTAGGAATGATTAA 618 0.4223 MASFSMPILGLNAQREEMLMVFDSSGFDYNHNMQRNIRSRSRGELGYNNHNMQSSRIQSRVELGYNNLNMQNNVRDDVYILDSLDLGYNHNMQNNVRERVYVFNSVDLDGGVSRVMESTTQDLEEVTVEAESTTTQDSRSFQNLEEVTIEAESSSITDCSICLGEIGSSAIGLPCSHVFHRDCITKWLMLRNSCPLCRCSVSRND 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3791g00002 205 SUPERFAMILY RING/U-box 158 202 - -
Gabi3791g00002 205 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 58 199 - -
Gabi3791g00002 205 ProSiteProfiles Zinc finger RING-type profile. 159 198 IPR001841 -
Gabi3791g00002 205 CDD RING-H2_PA-TM-RING 158 198 - -
Gabi3791g00002 205 SMART ring_2 159 197 IPR001841 -
Gabi3791g00002 205 Pfam Ring finger domain 158 198 IPR001841 -
Gabi3791g00002 205 SMART ringv_2 158 198 IPR011016 GO:0008270
Gabi3791g00002 205 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 203 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3791g00002 Gabi-Chr3791 60077 60694 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3791g00002 158 198 C3H Transcription Factor Family AT5G54990 62.791 1.15e-12 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3791g00002 - K11982 lang:109353994 85.1149