Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3791g00001 ATGCAAAGAAATATCAGATCTCGTGGTCGTGGAGAATTGGGTTACAATAACCACAACATGCAAAGCAGCAGGATCCAATCTCGTGTGGAATTGGGTTACAATAACCTCAACATGCAAAACAACGTTAGAGATGATGTTTACATCTTGGATTCGCTGGACTTGGGTTACAACCACAACATGCAAAACAATGTAAGAGAAAGGGTTTATGTCTTTAATTCTGTCGATTTGGATGGTGGAGTTTCAAGGGTAATGGAGTCCACGACACAAGATCTTGAAGAGGTCACAGTTGAAGCAGAGTCCACAACAACACAAGACTCTAGATCTTTTCAAAATCTTGAAGAGGTCACGATTGAAGCAGAGTCTTCTTCCATCACCGACTGTTCTATTTGTCTCGGGGAGATTGGTTCAAGTGCAATTGGCTTGCCTTGTTCACACGTGTTTCATCGGGATTGCATCACTAAGTGGCTCATGCTTCGCAATTCATGTCCTTTATGTAGATGCAGTGTGTCTAGGAATGATTAA 522 0.4195 MQRNIRSRGRGELGYNNHNMQSSRIQSRVELGYNNLNMQNNVRDDVYILDSLDLGYNHNMQNNVRERVYVFNSVDLDGGVSRVMESTTQDLEEVTVEAESTTTQDSRSFQNLEEVTIEAESSSITDCSICLGEIGSSAIGLPCSHVFHRDCITKWLMLRNSCPLCRCSVSRND 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3791g00001 173 Pfam Ring finger domain 126 166 IPR001841 -
Gabi3791g00001 173 SMART ringv_2 126 166 IPR011016 GO:0008270
Gabi3791g00001 173 CDD RING-H2_PA-TM-RING 126 166 - -
Gabi3791g00001 173 ProSiteProfiles Zinc finger RING-type profile. 127 166 IPR001841 -
Gabi3791g00001 173 SUPERFAMILY RING/U-box 126 170 - -
Gabi3791g00001 173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 171 IPR013083 -
Gabi3791g00001 173 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 66 167 - -
Gabi3791g00001 173 SMART ring_2 127 165 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3791g00001 Gabi-Chr3791 39545 40066 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3791g00001 126 166 C3H Transcription Factor Family AT5G54990 62.791 6.29e-13 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3791g00001 - K11982 lang:109353994 85.1149