Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi378g00025 ATGACTACATGTTGTTTAGCAAGACATGCTCTAAACTTGCTTCGTGAAAGGAAGGACGGATATGATATAGTGATCAGTGATGTAAACATGCCTGACATGGATGGTTTCAAACTTCTTGAGCATGTTGGACTTGAGATGGATCTTCCTGTCATCATGATGTCTGTGGATGGAGAAACAAGCAGGGTAATGAAAGGCGTTCAACATGGAGCATGTGATTATCTCCTTAAGCCTATAAGGATGAAAGAGCTGCGAAATATATGGCAACATGTCTTTAGAAAAAGGATACATGAGGCAAGAGAATTTGAAAGCTTTGAGAGTTTTGAAAGCATTCACTTATTGAGAAATGGATCAGAGCAGTCTGATGATGGGAACCTGTTTGCTATAGAAGATATGACCTCAACGAAGAAAAGAAAAGATGTAGATAACAAACATGATGACATAGAATTTCTGGATCCATCTTCCACAAAGAAAGCTAGAGTAGTTTGGTCTGTAGATCTTCATCAGAAGTTTGTTAAAGCAGTGAATCAGATTGGATTTGATAAAGTTGGTCCGAAGAAAATACTAGATTTGATGAATGTTCCATGGCTGACTAGAGAAAATGTTGCTAGCCACTTGCAGAAATACCGGCTTTACTTGAGTAGGCTTCAGAAAGAAAACGATCTAAAATCTTCCTCAAGTGGAATGAAGCATTCAGATTTACCTTCAAAAGATCTAGCAAGTTTTGGCTTTCAGAACTCGGTAAACAAGCAACAAAATGATATTTCAATTGACAGCTACAGTTATTCAGATGGAACACCACAACTTCAAAGCATGGAAAGTAAAAGTCATGAAGGTGATCCCAAGGGAATTGTTTCACAGTCCACCACGGCAGAAAAAGGAAGAGCTTTCACTGGTAACATTACTGATACAAACCATGCAGTGTTTGATTGCACCATGCCAACACAGTACTCTTGGACTGAAGTTCCAGAAATGCAACTCAAAAAAGAACACAAGTTCCAGAAATGCTCCATGCCATTACATGTTAAGCAGCATCACATCCAAGTTGATCAATCACAACAATCAATTGCTTCAATTAGTTCCACTCCCTCTATAACGGAGGAAGAGGTTGCTGCTTGTATAGAAACAAAACCTTTGTTTTCTGATTACAAGAGTGATTACACAAGTTCTGTGAGTTCAAAAGGGAGTGCAGTTGACACCTTTCCTATTCAACCCGGAAGCCTTATTATCAATGGTCAATCTTCAGAACCAATTTCCACTACAAATTTGGGGTTGAAAACGCAGGGATCTAATCTCAGTTCCATTTTGGATATGGAGTTTTACCAAAGAAACCTACTTTTGGGAGGTGAGGCAGCTTCTGCACCTTTGGATGAGGACTTACATTTCTATCAGCTACAAGGTGAATGCTATAATATGAACTTTGGTCTGCAGAATATAGGGATGTGTGAGTATTATGATCCAGGGCTTATCACTGAAGTTCCAAACCACATATACGATTCAGCAGATTATTTAGTAATAGATCAAGGTCTATTCATAGCATGA 1539 0.3873 MTTCCLARHALNLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRIHEAREFESFESFESIHLLRNGSEQSDDGNLFAIEDMTSTKKRKDVDNKHDDIEFLDPSSTKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKENDLKSSSSGMKHSDLPSKDLASFGFQNSVNKQQNDISIDSYSYSDGTPQLQSMESKSHEGDPKGIVSQSTTAEKGRAFTGNITDTNHAVFDCTMPTQYSWTEVPEMQLKKEHKFQKCSMPLHVKQHHIQVDQSQQSIASISSTPSITEEEVAACIETKPLFSDYKSDYTSSVSSKGSAVDTFPIQPGSLIINGQSSEPISTTNLGLKTQGSNLSSILDMEFYQRNLLLGGEAASAPLDEDLHFYQLQGECYNMNFGLQNIGMCEYYDPGLITEVPNHIYDSADYLVIDQGLFIA 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi378g00025 512 MobiDBLite consensus disorder prediction 254 290 - -
Gabi378g00025 512 CDD REC_typeB_ARR-like 2 91 - -
Gabi378g00025 512 MobiDBLite consensus disorder prediction 254 273 - -
Gabi378g00025 512 PANTHER TWO-COMPONENT RESPONSE REGULATOR 2 275 IPR045279 GO:0009736
Gabi378g00025 512 SUPERFAMILY Homeodomain-like 155 214 IPR009057 -
Gabi378g00025 512 ProSiteProfiles Response regulatory domain profile. 1 91 IPR001789 GO:0000160
Gabi378g00025 512 Gene3D - 153 216 - -
Gabi378g00025 512 Gene3D - 2 148 - -
Gabi378g00025 512 Pfam Myb-like DNA-binding domain 159 209 IPR001005 -
Gabi378g00025 512 NCBIfam myb-like DNA-binding domain, SHAQKYF class 157 210 IPR006447 GO:0003677
Gabi378g00025 512 FunFam Two-component response regulator 153 216 - -
Gabi378g00025 512 SUPERFAMILY CheY-like 8 106 IPR011006 -
Gabi378g00025 512 SMART REC_2 1 87 IPR001789 GO:0000160
Gabi378g00025 512 Pfam Response regulator receiver domain 7 86 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi378g00025 Gabi-Chr378 139530 142256 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi378g00025 50 476 Response Regulator Gene Family AT1G67710 39.866 2.23e-72 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Gabi378g00025 Response_reg 5.3e-16 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi378g00025 K14491 - gmx:100797421 804.668