Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi378g00024 ATGGATAATGGTTGTTTCCCTTCCCCTCGACGCGATTTTCCTGCTGGTCTGCGAGTTCTCGTCGTGGATGATGATCCAACATGGCTGAAGATCCTTGAAAAGATGCTCAAGAAGTGCAATTATGAAGTGACTACATGTTGTTTAGCAAGACATGCTCTAAACTTGCTTCGTGAAAGGAAGGACGGATATGATATAGTGATCAGTGATGTAAACATGCCTGACATGGATGGTTTCAAACTTCTTGAGCATGTTGGACTTGAGATGGATCTTCCTGTCATCATGATGTCTGTGGATGGAGAAACAAGCAGGGTAATGAAAGGCGTTCAACATGGAGCATGTGATTATCTCCTTAAGCCTATAAGGATGAAAGAGCTGCGAAATATATGGCAACATGTCTTTAGAAAAAGGATACATGAGGCAAGAGAATTTGAAAGCTTTGAGAGTTTTGAAAGCATTCACTTATTGAGAAATGGATCAGAGCAGTCTGATGATGGGAACCTGTTTGCTATAGAAGATATGACCTCAACGAAGAAAAGAAAAGATGTAGATAACAAACATGATGACATAGAATTTCTGGATCCATCTTCCACAAAGAAAGCTAGAGTAGTTTGGTCTGTAGATCTTCATCAGAAGTTTGTTAAAGCAGTGAATCAGATTGGATTTGATATTGGTCCGAAGAAAATACTAGATTTGATGAATGTTCCATGGCTGACTAGAGAAAATGTTGCTAGCCACTTGCAGAAATACCGGCTTTACTTGAGTAGGCTTCAGAAAGAAAACGATCTAAAATCTTCCTCAAGTGGAATGAAGCATTCAGATTTACCTTCAAAAGATCTAGCAAGTTTTGGCTTTCAGAACTCGGTAAACAAGCAACAAAATGATATTTCAATTGACAGCTACAGTTATTCAGATGGAACACCACAACTTCAAAGCATGGAAAGTAAAAGTCATGAAGGTGATCCCAAGGGAATTGTTTCACAGTCCACCACGGCAGAAAAAGGAAGAGCTTTCACTGGTAACATTACTGATACAAACCATGCAGTGTTTGATTGCACCATGCCAACACAGTACTCTTGGACTGAAGTTCCAGAAATGCAACTCAAAAAAGAACACAAGTTCCAGAAATGCTCCATGCCATTACATGTTAAGCAGCATCACATCCAAGTTGATCAATCACAACAATCAATTGCTTCAATTAGTTCCACTCCCTCTATAACGGAGGAAGAGGTTGCTGCTTGTATAGAAACAAAACCTTTGTTTTCTGATTACAAGAGTGATTACACAAGTTCTGTGAGTTCAAAAGGGAGTGCAGTTGACACCTTTCCTATTCAACCCGGAAGCCTTATTATCAATGGTCAATCTTCAGAACCAATTTCCACTACAAATTTGGGGTTGAAAACGCAGGGATCTAATCTCAGTTCCATTTTGGATATGGAGTTTTACCAAAGAAACCTACTTTTGGGAGGTGAGGCAGCTTCTGCACCTTTGGATGAGGACTTACATTTCTATCAGCTACAAGGTGAATGCTATAATATGAACTTTGGTCTGCAGAATATAGGGATGTGTGAGTATTATGATCCAGGGCTTATCACTGAAGTTCCAAACCACATATACGATTCAGCAGATTATTTAGTAATAGATCAAGGTCTATTCATAGCATGA 1662 0.3935 MDNGCFPSPRRDFPAGLRVLVVDDDPTWLKILEKMLKKCNYEVTTCCLARHALNLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRIHEAREFESFESFESIHLLRNGSEQSDDGNLFAIEDMTSTKKRKDVDNKHDDIEFLDPSSTKKARVVWSVDLHQKFVKAVNQIGFDIGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKENDLKSSSSGMKHSDLPSKDLASFGFQNSVNKQQNDISIDSYSYSDGTPQLQSMESKSHEGDPKGIVSQSTTAEKGRAFTGNITDTNHAVFDCTMPTQYSWTEVPEMQLKKEHKFQKCSMPLHVKQHHIQVDQSQQSIASISSTPSITEEEVAACIETKPLFSDYKSDYTSSVSSKGSAVDTFPIQPGSLIINGQSSEPISTTNLGLKTQGSNLSSILDMEFYQRNLLLGGEAASAPLDEDLHFYQLQGECYNMNFGLQNIGMCEYYDPGLITEVPNHIYDSADYLVIDQGLFIA 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi378g00024 553 SUPERFAMILY CheY-like 16 148 IPR011006 -
Gabi378g00024 553 PANTHER TWO-COMPONENT RESPONSE REGULATOR 17 312 IPR045279 GO:0009736
Gabi378g00024 553 SUPERFAMILY Homeodomain-like 197 255 IPR009057 -
Gabi378g00024 553 FunFam Two-component response regulator 195 257 - -
Gabi378g00024 553 Gene3D - 195 257 - -
Gabi378g00024 553 Pfam Response regulator receiver domain 19 128 IPR001789 GO:0000160
Gabi378g00024 553 CDD REC_typeB_ARR-like 19 133 - -
Gabi378g00024 553 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160
Gabi378g00024 553 Gene3D - 17 190 - -
Gabi378g00024 553 SMART REC_2 17 129 IPR001789 GO:0000160
Gabi378g00024 553 Pfam Myb-like DNA-binding domain 201 250 IPR001005 -
Gabi378g00024 553 FunFam Two-component response regulator 17 180 - -
Gabi378g00024 553 MobiDBLite consensus disorder prediction 295 331 - -
Gabi378g00024 553 NCBIfam myb-like DNA-binding domain, SHAQKYF class 199 251 IPR006447 GO:0003677
Gabi378g00024 553 MobiDBLite consensus disorder prediction 295 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi378g00024 Gabi-Chr378 138402 142256 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi378g00024 13 409 Response Regulator Gene Family AT2G25180 42.822 8.54e-83 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Gabi378g00024 Response_reg 1.4e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi378g00024 K14491 - gmx:100797421 885.945