Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi378g00023 ATGGATAATGGTTGTTTCCCTTCCCCTCGACGCGATTTTCCTGCTGGTCTGCGAGTTCTCGTCGTGGATGATGATCCAACATGGCTGAAGATCCTTGAAAAGATGCTCAAGAAGTGCAATTATGAAGTGACTACATGTTGTTTAGCAAGACATGCTCTAAACTTGCTTCGTGAAAGGAAGGACGGATATGATATAGTGATCAGTGATGTAAACATGCCTGACATGGATGGTTTCAAACTTCTTGAGCATGTTGGACTTGAGATGGATCTTCCTGTCATCATGATGTCTGTGGATGGAGAAACAAGCAGGGTAATGAAAGGCGTTCAACATGGAGCATGTGATTATCTCCTTAAGCCTATAAGGATGAAAGAGCTGCGAAATATATGGCAACATGTCTTTAGAAAAAGGATACATGAGGCAAGAGAATTTGAAAGCTTTGAGAGTTTTGAAAGCATTCACTTATTGAGAAATGGATCAGAGCAGTCTGATGATGGGAACCTGTTTGCTATAGAAGATATGACCTCAACGAAGAAAAGAAAAGATGTAGATAACAAACATGATGACATAGAATTTCTGGATCCATCTTCCACAAAGAAAGCTAGAGTAGTTTGGTCTGTAGATCTTCATCAGAAGTTTGTTAAAGCAGTGAATCAGATTGGATTTGATAAAGTTGGTCCGAAGAAAATACTAGATTTGATGAATGTTCCATGGCTGACTAGAGAAAATGTTGCTAGCCACTTGCAGAAATACCGGCTTTACTTGAGTAGGCTTCAGAAAGAAAACGATCTAAAATCTTCCTCAAGTGGAATGAAGCATTCAGATTTACCTTCAAAAGATCTAGCAAGTTTTGGCTTTCAGAACTCGGTAAACAAGCAACAAAATGATATTTCAATTGACAGCTACAGTTATTCAGATGGAACACCACAACTTCAAAGCATGGAAAGTAAAAGTCATGAAGGTGATCCCAAGGGAATTGTTTCACAGTCCACCACGGCAGAAAAAGGAAGAGCTTTCACTGGTAACATTACTGATACAAACCATGCAGTGTTTGATTGCACCATGCCAACACAGTACTCTTGGACTGAAGTTCCAGAAATGCAACTCAAAAAAGAACACAAGTTCCAGAAATGCTCCATGCCATTACATGTTAAGCAGCATCACATCCAAGTTGATCAATCACAACAATCAATTGCTTCAATTAGTTCCACTCCCTCTATAACGGAGGAAGAGGTTGCTGCTTGTATAGAAACAAAACCTTTGTTTTCTGATTACAAGAGTGATTACACAAGTTCTGTGAGTTCAAAAGGGAGTGCAGTTGACACCTTTCCTATTCAACCCGGAAGCCTTATTATCAATGGTCAATCTTCAGAACCAATTTCCACTACAAATTTGGGGTTGAAAACGCAGGGATCTAATCTCAGTTCCATTTTGGATATGGAGTTTTACCAAAGAAACCTACTTTTGGGAGGTGAGGCAGCTTCTGCACCTTTGGATGAGGACTTACATTTCTATCAGCTACAAGGTGAATGCTATAATATGAACTTTGGTCTGCAGAATATAGGGATGTGTGAGTATTATGATCCAGGGCTTATCACTGAAGTTCCAAACCACATATACGATTCAGCAGATTATTTAGTAATAGATCAAGGTCTATTCATAGCATGA 1665 0.3934 MDNGCFPSPRRDFPAGLRVLVVDDDPTWLKILEKMLKKCNYEVTTCCLARHALNLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRIHEAREFESFESFESIHLLRNGSEQSDDGNLFAIEDMTSTKKRKDVDNKHDDIEFLDPSSTKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKENDLKSSSSGMKHSDLPSKDLASFGFQNSVNKQQNDISIDSYSYSDGTPQLQSMESKSHEGDPKGIVSQSTTAEKGRAFTGNITDTNHAVFDCTMPTQYSWTEVPEMQLKKEHKFQKCSMPLHVKQHHIQVDQSQQSIASISSTPSITEEEVAACIETKPLFSDYKSDYTSSVSSKGSAVDTFPIQPGSLIINGQSSEPISTTNLGLKTQGSNLSSILDMEFYQRNLLLGGEAASAPLDEDLHFYQLQGECYNMNFGLQNIGMCEYYDPGLITEVPNHIYDSADYLVIDQGLFIA 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi378g00023 554 FunFam Two-component response regulator 195 258 - -
Gabi378g00023 554 PANTHER TWO-COMPONENT RESPONSE REGULATOR 17 311 IPR045279 GO:0009736
Gabi378g00023 554 SUPERFAMILY CheY-like 16 148 IPR011006 -
Gabi378g00023 554 MobiDBLite consensus disorder prediction 296 332 - -
Gabi378g00023 554 SUPERFAMILY Homeodomain-like 197 256 IPR009057 -
Gabi378g00023 554 CDD REC_typeB_ARR-like 19 133 - -
Gabi378g00023 554 NCBIfam myb-like DNA-binding domain, SHAQKYF class 199 252 IPR006447 GO:0003677
Gabi378g00023 554 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160
Gabi378g00023 554 Gene3D - 17 190 - -
Gabi378g00023 554 SMART REC_2 17 129 IPR001789 GO:0000160
Gabi378g00023 554 MobiDBLite consensus disorder prediction 296 315 - -
Gabi378g00023 554 Pfam Myb-like DNA-binding domain 201 251 IPR001005 -
Gabi378g00023 554 FunFam Two-component response regulator 17 180 - -
Gabi378g00023 554 Gene3D - 195 258 - -
Gabi378g00023 554 Pfam Response regulator receiver domain 19 128 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi378g00023 Gabi-Chr378 138402 142256 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi378g00023 13 410 Response Regulator Gene Family AT2G25180 43.066 3.15e-85 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Gabi378g00023 Response_reg 1.4e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi378g00023 K14491 - gmx:100797421 892.878