Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi378g00022 ATGTGGCAAAAGCAGCCCAATAATTCTTCTTATAGTGATTCTATCAAGGCTCTCGAAGCTGATATCCAACATGCTAATACCCTGTCATCAGCACTTCCTCGAGATTATGGTGGGGACTATTTTCAGATGAAATTATCTTACAGCCCTTTTGCTCATCTTTTCTTGCACTTGATCGAATGGTTGGATTTTAGTTGTACAGATACTTTGCCCACGTATTTGGGCTTACTCCACATACTTATTTTCAATGTATATGTTGATGGAATGCCATCTATTTCCTCAAAAGAAAGGAAAGCCACAATAAAGGAATTCTATGCTGTAATATACCCTTCATTGAGGTTACTTCAAGGCGAGTTTAATGTGGCTAAAAACAATGATCAAAGAAGTAGCTGTGCAGATGTTGTGAGCAGAAAGAGGCTTGAAAAGCTTATTGATAAAGATCTAGAGGGAGAAGAGGAATGTGGCATATGCATGGAAAACAGCATGAAGATGGTTCTGCCTAATTGTGTTCATACGTTGTGCATTAGCTGCTTCCATGATTGGTACATGAGGTCAAAATCATGCCCATTTTGCCGTTGCAGCCTCAGGATGGTCACTCCTAGAGATTTATGGGTAGTTATTGGCAACAATGATGTGGTTGACAAGGTTACCATTGCAAAGGAGAATTTAAGACGTTTGTACCTTTACATGGAAACACTACCTCCGATTATACCGAATGCACATGTATATTCATTCAATTACATGCTATAA 747 0.3896 MWQKQPNNSSYSDSIKALEADIQHANTLSSALPRDYGGDYFQMKLSYSPFAHLFLHLIEWLDFSCTDTLPTYLGLLHILIFNVYVDGMPSISSKERKATIKEFYAVIYPSLRLLQGEFNVAKNNDQRSSCADVVSRKRLEKLIDKDLEGEEECGICMENSMKMVLPNCVHTLCISCFHDWYMRSKSCPFCRCSLRMVTPRDLWVVIGNNDVVDKVTIAKENLRRLYLYMETLPPIIPNAHVYSFNYML 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi378g00022 248 SUPERFAMILY RING/U-box 141 197 - -
Gabi378g00022 248 SMART ring_2 153 190 IPR001841 -
Gabi378g00022 248 Pfam Zinc finger, C3HC4 type (RING finger) 150 195 - -
Gabi378g00022 248 ProSiteProfiles Zinc finger RING-type profile. 153 191 IPR001841 -
Gabi378g00022 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 216 IPR013083 -
Gabi378g00022 248 PANTHER RING FINGER PROTEIN 41, 151 9 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi378g00022 Gabi-Chr378 127742 129931 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi378g00022 153 202 C3H Transcription Factor Family AT5G01960 38.000 7.11e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi378g00022 - - gmx:100805014 419.853