LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi378g00021	ATGGGTTTATTTTCTCTCTTTCTGGTTACACTTTCTCTTCTAACATCATATGCTGTTTGCCAACTTCAAGAATTTATCAGTATTGACTGTGGAGGCACAAGCAACTACACAGATACAAGCACAGGGCTTTCATGGATTTCAGATTCTGAGATCATGAACCATGGCATGCAAGTGGAAATCCAAAATCCCAATGGAAACAAGGTTCAGTACAAGAGACGCAGAGACTTTCCTATAGATAGCAGGAAATACTGTTATACACTTAGCACTGAGGAGAGAAGAAGGTATCTGGTAAGAGCAACGTTTCAGTATGGAAGCTTGGAAAATGGAGACACATACCCTCAGTTTCAGCTCTACTTGGATGCAACAAAATGGGCTACTGTGTCAATATATGATGCTTCAAGAATATATGTAAAGGAAATGATCTTCAGGGCACCCTCTAACTCAATTGATGTTTGCATGTGCTGTGCTACAACTGGTTCTCCCTTCATATCTACCCTTGAGCTTAGACCCTTGAATCTTTCTATGTATGCCACTGATTTTGAGGATGATTTCTTCTTGAAAGTGGCTGCAAGAATTAACTTTGGTGCTCCAAGCGAGGATGCTGTAAGGTATCCAGATGACCCATATGATAGAATTTGGGATTCTGATCTTATTAAAAGACAAAATTATCTTGTTGGGGTAGCCTCAGGCACAGAGAGAATTAACACAACAAAGAACATAGACATAGAGACAAGAGAACATCCACCTGTTAAAGTGATGCAAACTGCAGTTGTTGGCACAAAAGGAGAACTTAGTTACAGATTAAACCTGGAAGACTTCCCTGCCTATGCTAGAGCTTACGCGTATTTCGCGGAGATTCAAGATCTGGGTAAGAATGAGACTAGAAAATTCAAATTGGAGCAACCTTATATAGCTGACTATAGCAATGCAGTGGTGAACATAGCTGAGAATGCTAATGGGAGTTACACTCTTTATGAACCAAGTTACATGAATGTGAGTCTGGATTTTGTTCTTTCATTCAACTTTGTTAAGACCCGGGATTCTACTAGAGGACCTCTTCTAAATGCAATGGAAATAAGCAAATACTTACAAATTGCTTCAAAGACCGACAGGCAAGATTCAAATGTTGTAAATGCATTTAGCTCCTTGTCTTCTGAAAGTGTGCTGAAGAACGAAGGCGATCCTTGTGTTCCAACACCCTGGGAGTGGGTAAATTGTAGTACCACTACCCCTCCTAGAATTACAAAGATAAACCTGTCAAGAAGGAATGTGAAGGGTGAAATCCCACGTGAGCTCAACAACATGGAAGCATTGACAGAGTTGTGGTTAGATGGCAACTTGCTTACTGGACAACTACCTGATATGAGTAATCTTATCAATCTAAAGATTGTCCATCTAGAGAACAACAAATTGACTGGTCCACTACCATCTTACTTGGGTAGTTTGCCAAGTTTACAAGCACTGTTCATACAGAATAACTCATTTAATGGGGAAATACCAGCAGGGTTAGTATCTGGAAAAATCATTTTCAACTATGATGATAATCCTGGACTACATAAAGGGAACAAGAAGCATTTTCACTTGATGCTTGGAATTTCTATTGGAGTACTAGGGATTCTATTCATATTGTTCTTAACAAGTTTGGTGCTATTGCATAATCTGCGGAGAAAGACATCTCAACAGAAACGTGATGAAAAAGGTATTTCTGGACGCAGTAGCACTAAACCTCTAACTGGATACTCATCTGCTCGGGGTGGGAATTTAATGGATGAAGGTATTGCTTATTATATGCCGCTTTCAGAGTTGAAAGAAGCTACTAATAATTTTTCAAAGAAAATTGGCAGAGGAAGCTTTGGATCAGTCTACTATGGGAAAATGAGAGATGGAAAAGAGGTGGCAGTTAAGATTATGACTGATCCATCAAGCCATGGGAACCAGCAATTTGTGAATGAGGTAGCTCTCCTATCAAGAATTCATCACAGAAACTTGGTTCCTCTGATTGGATATTGTGAAGAAGAAAATCAGCATATTCTGGTTTATGAGTATATGCACAATGGCACTTTACGGGATCACATTCATGAATGCTCAAATCAGAAGCAATTAGACTGGTTAGCTCGACTTCGAATTGCAGAAGATTCAGCTAAAGGTCTTGAATACTTACACACAGGATGCAATCCTAGTATCATTCACCGAGATGTAAAGACAAGCAATATTCTCCTAGACATCAATATGAGAGCAAAAGTTTCAGATTTTGGACTCTCAAGACTAGCTGAAGAAGATTTAACTCATATATCAAGTGTTGCACGTGGAACTGTAGGCTACCTGGATCCTGAGTACTATGCAAATCAGCAATTGACTGAAAAGAGTGATGTATACAGTTTTGGAGTTGTTCTACTAGAACTGATATCTGGAAGAAAACCTGTTTCATCAGAAGATTATGGTTCCGAAATGAATATTGTTCACTGGGCAAGATCCTTAATTCGTAAAGGAGATGTAGTAAGCATAATGGATCCTTCCCTAGTTGGGAATGTCAAAACTGAGTCAATTTGGAGGGTAGCTGAAATTGCCATGCAATGTGTAGAACAACATGGTGCCTCAAGGCCAAGGATGCAAGAAGTCATTTTGGCTATACAAGATGCTTCTAAGATTGAAAAAGGGACAGATAGTGAGCCAACATTATCATCATCTTCATGTAGTTCAAAACCACAATCTTCACGGAAAACTTTACTTACAAGCTTTCTTGAAATTGAGAGCCCTGACTTGTCAAATGGTTGCCTCCCTTCAGCAAGATAA	2793	0.3931	MGLFSLFLVTLSLLTSYAVCQLQEFISIDCGGTSNYTDTSTGLSWISDSEIMNHGMQVEIQNPNGNKVQYKRRRDFPIDSRKYCYTLSTEERRRYLVRATFQYGSLENGDTYPQFQLYLDATKWATVSIYDASRIYVKEMIFRAPSNSIDVCMCCATTGSPFISTLELRPLNLSMYATDFEDDFFLKVAARINFGAPSEDAVRYPDDPYDRIWDSDLIKRQNYLVGVASGTERINTTKNIDIETREHPPVKVMQTAVVGTKGELSYRLNLEDFPAYARAYAYFAEIQDLGKNETRKFKLEQPYIADYSNAVVNIAENANGSYTLYEPSYMNVSLDFVLSFNFVKTRDSTRGPLLNAMEISKYLQIASKTDRQDSNVVNAFSSLSSESVLKNEGDPCVPTPWEWVNCSTTTPPRITKINLSRRNVKGEIPRELNNMEALTELWLDGNLLTGQLPDMSNLINLKIVHLENNKLTGPLPSYLGSLPSLQALFIQNNSFNGEIPAGLVSGKIIFNYDDNPGLHKGNKKHFHLMLGISIGVLGILFILFLTSLVLLHNLRRKTSQQKRDEKGISGRSSTKPLTGYSSARGGNLMDEGIAYYMPLSELKEATNNFSKKIGRGSFGSVYYGKMRDGKEVAVKIMTDPSSHGNQQFVNEVALLSRIHHRNLVPLIGYCEEENQHILVYEYMHNGTLRDHIHECSNQKQLDWLARLRIAEDSAKGLEYLHTGCNPSIIHRDVKTSNILLDINMRAKVSDFGLSRLAEEDLTHISSVARGTVGYLDPEYYANQQLTEKSDVYSFGVVLLELISGRKPVSSEDYGSEMNIVHWARSLIRKGDVVSIMDPSLVGNVKTESIWRVAEIAMQCVEQHGASRPRMQEVILAIQDASKIEKGTDSEPTLSSSSCSSKPQSSRKTLLTSFLEIESPDLSNGCLPSAR	930

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi378g00021	930	Pfam	Malectin-like domain	28	361	IPR024788	-
	Gabi378g00021	930	MobiDBLite	consensus disorder prediction	887	905	-	-
	Gabi378g00021	930	ProSiteProfiles	Protein kinase domain profile.	607	893	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi378g00021	930	FunFam	LRR receptor-like serine/threonine-protein kinase ERECTA	408	499	-	-
	Gabi378g00021	930	CDD	STKc_IRAK	613	874	-	-
	Gabi378g00021	930	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	728	740	IPR008271	GO:0004672\|GO:0006468
	Gabi378g00021	930	SUPERFAMILY	Protein kinase-like (PK-like)	593	874	IPR011009	-
	Gabi378g00021	930	FunFam	serine/threonine-protein kinase PBS1-like	582	682	-	-
	Gabi378g00021	930	PANTHER	OS07G0107800 PROTEIN-RELATED	455	880	-	-
	Gabi378g00021	930	Gene3D	Transferase(Phosphotransferase) domain 1	683	898	-	-
	Gabi378g00021	930	MobiDBLite	consensus disorder prediction	560	583	-	-
	Gabi378g00021	930	SMART	serkin_6	607	882	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi378g00021	930	Gene3D	Ribonuclease Inhibitor	363	511	IPR032675	-
	Gabi378g00021	930	ProSitePatterns	Protein kinases ATP-binding region signature.	613	635	IPR017441	GO:0005524
	Gabi378g00021	930	FunFam	LRR receptor-like serine/threonine-protein kinase IOS1	683	890	-	-
	Gabi378g00021	930	SUPERFAMILY	L domain-like	397	504	-	-
	Gabi378g00021	930	Pfam	Protein tyrosine and serine/threonine kinase	609	874	IPR001245	GO:0004672\|GO:0006468
	Gabi378g00021	930	Gene3D	Phosphorylase Kinase; domain 1	582	682	-	-
	Gabi378g00021	930	MobiDBLite	consensus disorder prediction	885	905	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi378g00021	Gabi-Chr378	117372	124067	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi378g00021	1	930	Receptor kinase-like Gene Family	AT1G67720	69.593	0.0	1313

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-I-1	Gabi378g00021		Malectin_like	2.5e-89	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi378g00021	-		-	gmx:100807148	1628.99