Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3789g00005 ATGGATGTTCTTTCTTTATTGATCATTGTTGCATATATACTTATCCCTTCTCTCAAATTTTCCATAGCAGTTGATACCATTCTTCTATCCCAGTCCATCAGTGATGGCATCACCTTGGTTTCCCAAGGTGGAAAATTTGAACTTGGTTTCTTCAGCCCTGAGAATTCCAACAAACGTTATCTGGGAATTTGGTACAAGAATATCCAAATTCAGACGGTTGTTTGGGTTGCAAACGGGGTCAACGCCATCAATGATTCCTCTGGAATCTTAACACTGAACAGCACTTGCAACCTTGTCCTTAGACAACATGACGAGGTTGTTTGGTACACAACATCTGAAAAACAAGCACAGAATCCAGTGGCACAGCTTCTAGATTCAGGGAATCTCGTGGTAAGAGACAAGAGTGAAGAAAACCCTAAAGCCTATTTGTGGCAAAGCTTTGATTACCCATCTGATACAGCACTGCCAGGGATGAAGTTGGGATGGAACCTCAGAATTGGTCTGAATTGGAGAATGACATCTTGGAAGAGTCCTTATGATCCATCCCCAGGAGACTTTTATTGGGGTTCATTTCTCTATAATTATCCTGAGGTTTATCTTATGAAGGGAACAGAAAAGTATGTAAGAATTGGACCATGGAATGGCCTTTATTTTAGTGGCATACCAGATCAAAAGCCTAACCCCATTTATGATTTCATATTCATATCCAATAAGGATGAGATGTACTACATGTATAGCCTCAAGAATGTTTCTGTAATCTCAAGATTGGTAGTGAATCAAACCACTTCTATGTGTTACCGATATGTATGGATGGAAGATGAACAAATTTGGAAGGTTTATAAGTCACTTCCAAAAGACAATTGTGACTATTATCGCCTCTGTGGAGCCTACGGAACTTGCATAATTACAGGCTCCCAAATCTGCCAATGTTTAAGAGGGTTCAGTCCCAAGTCACCAGAAGCATGGAACTCATCTGATTGGACTCAAGGATGTGTCCGTAATAAACCATTAAACTGCACTGAGAAACTCAAGGATGGATTTGTGAAAGTGGAAGGTGTAAAAGTGCCAGACACTACACAGACTTTGGTGGATGAGACAATAGGTCTAGACGAATGCAGATTCAAGTGCTTGAATAACTGTTCTTGCATGGCCTATACTAATTCAGACGTAGCGGGAGCAGGTAGTGGCTGTGTCATGTGGTTTGGTGATCTAATTGATATTAGACAGTTTCAAGATGCTGGGCAGGAACTATATATTCGAATGGATGCTTCAGAATTAGAAGAACAAGATGGGCACAAGAAGGAGCTGACAATAATAGTTGCTACCACCATTGCTATAATTTCAGTGATGCTATTTGTTGGTTGTTGTCGTATCTACATTGCACGGCGCAGGATAACTGCAGAGAATTCAGATATTTTAGAACTAACGGAAGGTGATCAAAATAGAGGAGGTAGTGAGGATGATCTTGATCTCCCATTTCTCGACCTTTCAACAATAGTGACTGCCACTGATAACTTCTCAATAAAGAACAAGATTGGAGAAGGTGGTTTTGGACCTGTTTACAAGGGAAAACTAGTAACTGGACAAGAAATTGCTGTGAAGAGGCTTTCAAGAAGCTCCGGACAAGGAATGACTGAGTTCAAGAATGAAGTAAAACTGATAGCAAAACTTCAGCACCGAAATCTTGTTAAGCTTCTTGGTTGTTGCATTCAGGGACAAGACAGAATGCTGGTTTATGAATACATGACTAACCGTAGCTTGGATTGGTTGATTTTTGATGAATCTAAAAGCAAATTGCTAGATTGGCCAAAGCGCTTCAACATTATCTGTGGAATTGCTCGAGGTCTTCTCTATCTTCATCAAGATTCTAGATTGAGGATAATTCATAGAGACCTCAAAACAAGTAATGTTTTGCTTGATGACAAGCTAAATCCGAAAATATCAGATTTTGGCATTGCTAGAATCTTTGGAGGAGATCAGACAGAAGGCAACACAAAGCGAGTAGCTGGAACTTATGGCTACATGGCACCAGAATATGCTGCTGATGGACTTTTCTCTATGAAATCTGATGTTTTTAGTTTTGGTATTTTGTTGCTGGAGATTATAAGTGGAAAGAGAAGTAGAGGTTTTTATCTCGAAAACCACACTCCTAACCTTGTAACTCATGCATGGAGTCTTTGGAAAGAGGGAAGGGCTTTAGAACTGATTGACTCAAACATAGAGTACTCTTGTGTTCTATCAGAGGTATTGCGTTGCATCCATGTTAGTCTCTTATGTGTTCAGCAATACCCTGAGGATAGGCCTGTAATGTCTTCTGTGGTTCTAATGTTGGGAAGTGAGAGTGAATTAGCTGAGCCAAAAGAGCCTGGTTTTTATGTAAAAAAGGATTCGGATGCAGCAACTTCTTACTCAGGTAGAAGTGAAATGATCTCAACCAATGGAATAACTATCACCTTATTAGAAGCTCGATGA 2472 0.4001 MDVLSLLIIVAYILIPSLKFSIAVDTILLSQSISDGITLVSQGGKFELGFFSPENSNKRYLGIWYKNIQIQTVVWVANGVNAINDSSGILTLNSTCNLVLRQHDEVVWYTTSEKQAQNPVAQLLDSGNLVVRDKSEENPKAYLWQSFDYPSDTALPGMKLGWNLRIGLNWRMTSWKSPYDPSPGDFYWGSFLYNYPEVYLMKGTEKYVRIGPWNGLYFSGIPDQKPNPIYDFIFISNKDEMYYMYSLKNVSVISRLVVNQTTSMCYRYVWMEDEQIWKVYKSLPKDNCDYYRLCGAYGTCIITGSQICQCLRGFSPKSPEAWNSSDWTQGCVRNKPLNCTEKLKDGFVKVEGVKVPDTTQTLVDETIGLDECRFKCLNNCSCMAYTNSDVAGAGSGCVMWFGDLIDIRQFQDAGQELYIRMDASELEEQDGHKKELTIIVATTIAIISVMLFVGCCRIYIARRRITAENSDILELTEGDQNRGGSEDDLDLPFLDLSTIVTATDNFSIKNKIGEGGFGPVYKGKLVTGQEIAVKRLSRSSGQGMTEFKNEVKLIAKLQHRNLVKLLGCCIQGQDRMLVYEYMTNRSLDWLIFDESKSKLLDWPKRFNIICGIARGLLYLHQDSRLRIIHRDLKTSNVLLDDKLNPKISDFGIARIFGGDQTEGNTKRVAGTYGYMAPEYAADGLFSMKSDVFSFGILLLEIISGKRSRGFYLENHTPNLVTHAWSLWKEGRALELIDSNIEYSCVLSEVLRCIHVSLLCVQQYPEDRPVMSSVVLMLGSESELAEPKEPGFYVKKDSDAATSYSGRSEMISTNGITITLLEAR 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3789g00005 823 Pfam Protein tyrosine and serine/threonine kinase 507 775 IPR001245 GO:0004672|GO:0006468
Gabi3789g00005 823 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 181 IPR036426 -
Gabi3789g00005 823 Pfam S-locus glycoprotein domain 209 318 IPR000858 GO:0048544
Gabi3789g00005 823 Gene3D Phosphorylase Kinase; domain 1 477 581 - -
Gabi3789g00005 823 ProSiteProfiles Bulb-type lectin domain profile. 24 144 IPR001480 -
Gabi3789g00005 823 SMART serkin_6 506 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3789g00005 823 Gene3D Transferase(Phosphotransferase) domain 1 582 792 - -
Gabi3789g00005 823 CDD STKc_IRAK 512 777 - -
Gabi3789g00005 823 CDD PAN_AP_plant 336 420 - -
Gabi3789g00005 823 SMART blect_4 30 150 IPR001480 -
Gabi3789g00005 823 ProSiteProfiles EGF-like domain profile. 284 320 IPR000742 -
Gabi3789g00005 823 SUPERFAMILY Protein kinase-like (PK-like) 492 777 IPR011009 -
Gabi3789g00005 823 PIRSF SRK 1 823 IPR024171 GO:0004674
Gabi3789g00005 823 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 20 147 - -
Gabi3789g00005 823 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 472 581 - -
Gabi3789g00005 823 Gene3D - 20 147 IPR036426 -
Gabi3789g00005 823 ProSiteProfiles Protein kinase domain profile. 506 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3789g00005 823 Pfam D-mannose binding lectin 72 176 IPR001480 -
Gabi3789g00005 823 ProSiteProfiles PAN/Apple domain profile. 339 423 IPR003609 -
Gabi3789g00005 823 Pfam PAN-like domain 339 407 IPR003609 -
Gabi3789g00005 823 ProSitePatterns Serine/Threonine protein kinases active-site signature. 627 639 IPR008271 GO:0004672|GO:0006468
Gabi3789g00005 823 Pfam Domain of unknown function (DUF3403) 780 823 IPR021820 GO:0004674
Gabi3789g00005 823 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 17 768 - -
Gabi3789g00005 823 CDD B_lectin 30 150 IPR001480 -
Gabi3789g00005 823 SMART ntp_6 342 421 IPR003609 -
Gabi3789g00005 823 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 582 785 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3789g00005 Gabi-Chr3789 37474 41392 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3789g00005 436 794 Receptor kinase-like Gene Family AT4G23230 53.889 4.03e-128 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi3789g00005 PK_Tyr_Ser-Thr 2.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3789g00005 - - gmx:100775648 1364.36