Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3789g00004 ATGGATGTTCTTTCTTTATTGATCATTGTTGCATATATACTTATCCCTTCTCTCAAATTTTCCATAGCAGTTGATACCATTCTTCTATCCCAGTCCATCAGTGATGGCATCACCTTGGTTTCCCAAGGTGGAAAATTTGAACTTGGTTTCTTCAGCCCTGAGAATTCCAACAAACGTTATCTGGGAATTTGGTACAAGAATATCCAAATTCAGACGGTTGTTTGGGTTGCAAACGGGGTCAACGCCATCAATGATTCCTCTGGAATCTTAACACTGAACAGCACTTGCAACCTTGTCCTTAGACAACATGACGAGGTTGTTTGGTACACAACATCTGAAAAACAAGCACAGAATCCAGTGGCACAGCTTCTAGATTCAGGGAATCTCGTGGTAAGAGACAAGAGTGAAGAAAACCCTAAAGCCTATTTGTGGCAAAGCTTTGATTACCCATCTGATACAGCACTGCCAGGGATGAAGTTGGGATGGAACCTCAGAATTGGTCTGAATTGGAGAATGACATCTTGGAAGAGTCCTTATGATCCATCCCCAGGAGACTTTTATTGGGGTTCATTTCTCTATAATTATCCTGAGGTTTATCTTATGAAGGGAACAGAAAAGTATGTAAGAATTGGACCATGGAATGGCCTTTATTTTAGTGGCATACCAGATCAAAAGCCTAACCCCATTTATGATTTCATATTCATATCCAATAAGGATGAGATGTACTACATGTATAGCCTCAAGAATGTTTCTGTAATCTCAAGATTGGTAGTGAATCAAACCACTTCTATGTGTTACCGATATGTATGGATGGAAGATGAACAAATTTGGAAGGTTTATAAGTCACTTCCAAAAGACAATTGTGACTATTATCGCCTCTGTGGAGCCTACGGAACTTGCATAATTACAGGCTCCCAAATCTGCCAATGTTTAAGAGGGTTCAGTCCCAAGTCACCAGAAGCATGGAACTCATCTGATTGGACTCAAGGATGTGTCCGTAATAAACCATTAAACTGCACTGAGAAACTCAAGGATGGATTTGTGAAAGTGGAAGGTGTAAAAGTGCCAGACACTACACAGACTTTGGTGGATGAGACAATAGGTCTAGACGAATGCAGATTCAAGTGCTTGAATAACTGTTCTTGCATGGCCTATACTAATTCAGACGTAGCGGGAGCAGGTAGTGGCTGTGTCATGTGGTTTGGTGATCTAATTGATATTAGACAGTTTCAAGATGCTGGGCAGGAACTATATATTCGAATGGATGCTTCAGAATTAGGTAAGGAAGAACAAGATGGGCACAAGAAGGAGCTGACAATAATAGTTGCTACCACCATTGCTATAATTTCAGTGATGCTATTTGTTGGTTGTTGTCGTATCTACATTGCACGGCGCAGGATAACTGAGAATTCAGATATTTTAGAACTAACGGAAGGTGATCAAAATAGAGGAGGTAGTGAGGATGATCTTGATCTCCCATTTCTCGACCTTTCAACAATAGTGACTGCCACTGATAACTTCTCAATAAAGAACAAGATTGGAGAAGGTGGTTTTGGACCTGTTTACAAGGGAAAACTAGTAACTGGACAAGAAATTGCTGTGAAGAGGCTTTCAAGAAGCTCCGGACAAGGAATGACTGAGTTCAAGAATGAAGTAAAACTGATAGCAAAACTTCAGCACCGAAATCTTGTTAAGCTTCTTGGTTGTTGCATTCAGGGACAAGACAGAATGCTGGTTTATGAATACATGACTAACCGTAGCTTGGATTGGTTGATTTTTGATGAATCTAAAAGCAAATTGCTAGATTGGCCAAAGCGCTTCAACATTATCTGTGGAATTGCTCGAGGTCTTCTCTATCTTCATCAAGATTCTAGATTGAGGATAATTCATAGAGACCTCAAAACAAGTAATGTTTTGCTTGATGACAAGCTAAATCCGAAAATATCAGATTTTGGCATTGCTAGAATCTTTGGAGGAGATCAGACAGAAGGCAACACAAAGCGAGTAGCTGGAACTTATGGCTACATGGCACCAGAATATGCTGCTGATGGACTTTTCTCTATGAAATCTGATGTTTTTAGTTTTGGTATTTTGTTGCTGGAGATTATAAGTGGAAAGAGAAGTAGAGGTTTTTATCTCGAAAACCACACTCCTAACCTTGTAACTCATGCATGGAGTCTTTGGAAAGAGGGAAGGGCTTTAGAACTGATTGACTCAAACATAGAGTACTCTTGTGTTCTATCAGAGGTATTGCGTTGCATCCATGTTAGTCTCTTATGTGTTCAGCAATACCCTGAGGATAGGCCTGTAATGTCTTCTGTGGTTCTAATGTTGGGAAGTGAGAGTGAATTAGCTGAGCCAAAAGAGCCTGGTTTTTATGTAAAAAAGGATTCGGATGCAGCAACTTCTTACTCAGGTAGAAGTGAAATGATCTCAACCAATGGAATAACTATCACCTTATTAGAAGCTCGATGA 2475 0.4 MDVLSLLIIVAYILIPSLKFSIAVDTILLSQSISDGITLVSQGGKFELGFFSPENSNKRYLGIWYKNIQIQTVVWVANGVNAINDSSGILTLNSTCNLVLRQHDEVVWYTTSEKQAQNPVAQLLDSGNLVVRDKSEENPKAYLWQSFDYPSDTALPGMKLGWNLRIGLNWRMTSWKSPYDPSPGDFYWGSFLYNYPEVYLMKGTEKYVRIGPWNGLYFSGIPDQKPNPIYDFIFISNKDEMYYMYSLKNVSVISRLVVNQTTSMCYRYVWMEDEQIWKVYKSLPKDNCDYYRLCGAYGTCIITGSQICQCLRGFSPKSPEAWNSSDWTQGCVRNKPLNCTEKLKDGFVKVEGVKVPDTTQTLVDETIGLDECRFKCLNNCSCMAYTNSDVAGAGSGCVMWFGDLIDIRQFQDAGQELYIRMDASELGKEEQDGHKKELTIIVATTIAIISVMLFVGCCRIYIARRRITENSDILELTEGDQNRGGSEDDLDLPFLDLSTIVTATDNFSIKNKIGEGGFGPVYKGKLVTGQEIAVKRLSRSSGQGMTEFKNEVKLIAKLQHRNLVKLLGCCIQGQDRMLVYEYMTNRSLDWLIFDESKSKLLDWPKRFNIICGIARGLLYLHQDSRLRIIHRDLKTSNVLLDDKLNPKISDFGIARIFGGDQTEGNTKRVAGTYGYMAPEYAADGLFSMKSDVFSFGILLLEIISGKRSRGFYLENHTPNLVTHAWSLWKEGRALELIDSNIEYSCVLSEVLRCIHVSLLCVQQYPEDRPVMSSVVLMLGSESELAEPKEPGFYVKKDSDAATSYSGRSEMISTNGITITLLEAR 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3789g00004 824 SUPERFAMILY Protein kinase-like (PK-like) 493 778 IPR011009 -
Gabi3789g00004 824 ProSitePatterns Serine/Threonine protein kinases active-site signature. 628 640 IPR008271 GO:0004672|GO:0006468
Gabi3789g00004 824 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 181 IPR036426 -
Gabi3789g00004 824 Pfam S-locus glycoprotein domain 209 318 IPR000858 GO:0048544
Gabi3789g00004 824 ProSiteProfiles Bulb-type lectin domain profile. 24 144 IPR001480 -
Gabi3789g00004 824 Gene3D Transferase(Phosphotransferase) domain 1 583 793 - -
Gabi3789g00004 824 CDD PAN_AP_plant 336 420 - -
Gabi3789g00004 824 SMART blect_4 30 150 IPR001480 -
Gabi3789g00004 824 SMART serkin_6 507 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3789g00004 824 Pfam Protein tyrosine and serine/threonine kinase 508 776 IPR001245 GO:0004672|GO:0006468
Gabi3789g00004 824 Pfam Domain of unknown function (DUF3403) 781 824 IPR021820 GO:0004674
Gabi3789g00004 824 ProSiteProfiles EGF-like domain profile. 284 320 IPR000742 -
Gabi3789g00004 824 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 20 147 - -
Gabi3789g00004 824 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 17 769 - -
Gabi3789g00004 824 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 473 582 - -
Gabi3789g00004 824 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 583 786 - -
Gabi3789g00004 824 Gene3D - 20 147 IPR036426 -
Gabi3789g00004 824 Pfam D-mannose binding lectin 72 176 IPR001480 -
Gabi3789g00004 824 ProSiteProfiles PAN/Apple domain profile. 339 423 IPR003609 -
Gabi3789g00004 824 ProSiteProfiles Protein kinase domain profile. 507 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3789g00004 824 Pfam PAN-like domain 339 407 IPR003609 -
Gabi3789g00004 824 CDD STKc_IRAK 513 778 - -
Gabi3789g00004 824 Gene3D Phosphorylase Kinase; domain 1 478 582 - -
Gabi3789g00004 824 CDD B_lectin 30 150 IPR001480 -
Gabi3789g00004 824 PIRSF SRK 1 824 IPR024171 GO:0004674
Gabi3789g00004 824 SMART ntp_6 342 421 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3789g00004 Gabi-Chr3789 37474 41392 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3789g00004 438 795 Receptor kinase-like Gene Family AT4G23230 54.875 5.71e-129 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi3789g00004 PK_Tyr_Ser-Thr 2.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3789g00004 - - gmx:100775648 1367.06