Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3789g00003 ATGGATGTTCTTTCTTTATTGATCATTGTTGCATATATACTTATCCCTTCTCTCAAATTTTCCATAGCAGTTGATACCATTCTTCTATCCCAGTCCATCAGTGATGGCATCACCTTGGTTTCCCAAGGTGGAAAATTTGAACTTGGTTTCTTCAGCCCTGAGAATTCCAACAAACGTTATCTGGGAATTTGGTACAAGAATATCCAAATTCAGACGGTTGTTTGGGTTGCAAACGGGGTCAACGCCATCAATGATTCCTCTGGAATCTTAACACTGAACAGCACTTGCAACCTTGTCCTTAGACAACATGACGAGGTTGTTTGGTACACAACATCTGAAAAACAAGCACAGAATCCAGTGGCACAGCTTCTAGATTCAGGGAATCTCGTGGTAAGAGACAAGAGTGAAGAAAACCCTAAAGCCTATTTGTGGCAAAGCTTTGATTACCCATCTGATACAGCACTGCCAGGGATGAAGTTGGGATGGAACCTCAGAATTGGTCTGAATTGGAGAATGACATCTTGGAAGAGTCCTTATGATCCATCCCCAGGAGACTTTTATTGGGGTTCATTTCTCTATAATTATCCTGAGGTTTATCTTATGAAGGGAACAGAAAAGTATGTAAGAATTGGACCATGGAATGGCCTTTATTTTAGTGGCATACCAGATCAAAAGCCTAACCCCATTTATGATTTCATATTCATATCCAATAAGGATGAGATGTACTACATGTATAGCCTCAAGAATGTTTCTGTAATCTCAAGATTGGTAGTGAATCAAACCACTTCTATGTGTTACCGATATGTATGGATGGAAGATGAACAAATTTGGAAGGTTTATAAGTCACTTCCAAAAGACAATTGTGACTATTATCGCCTCTGTGGAGCCTACGGAACTTGCATAATTACAGGCTCCCAAATCTGCCAATGTTTAAGAGGGTTCAGTCCCAAGTCACCAGAAGCATGGAACTCATCTGATTGGACTCAAGGATGTGTCCGTAATAAACCATTAAACTGCACTGAGAAACTCAAGGATGGATTTGTGAAAGTGGAAGGTGTAAAAGTGCCAGACACTACACAGACTTTGGTGGATGAGACAATAGGTCTAGACGAATGCAGATTCAAGTGCTTGAATAACTGTTCTTGCATGGCCTATACTAATTCAGACGTAGCGGGAGCAGGTAGTGGCTGTGTCATGTGGTTTGGTGATCTAATTGATATTAGACAGTTTCAAGATGCTGGGCAGGAACTATATATTCGAATGGATGCTTCAGAATTAGGTAAGGAAGAACAAGATGGGCACAAGAAGGAGCTGACAATAATAGTTGCTACCACCATTGCTATAATTTCAGTGATGCTATTTGTTGGTTGTTGTCGTATCTACATTGCACGGCGCAGGATAACTGCAGAGAATTCAGATATTTTAGAACTAACGGAAGGTGATCAAAATAGAGGAGGTAGTGAGGATGATCTTGATCTCCCATTTCTCGACCTTTCAACAATAGTGACTGCCACTGATAACTTCTCAATAAAGAACAAGATTGGAGAAGGTGGTTTTGGACCTGTTTACAAGGGAAAACTAGTAACTGGACAAGAAATTGCTGTGAAGAGGCTTTCAAGAAGCTCCGGACAAGGAATGACTGAGTTCAAGAATGAAGTAAAACTGATAGCAAAACTTCAGCACCGAAATCTTGTTAAGCTTCTTGGTTGTTGCATTCAGGGACAAGACAGAATGCTGGTTTATGAATACATGACTAACCGTAGCTTGGATTGGTTGATTTTTGATGAATCTAAAAGCAAATTGCTAGATTGGCCAAAGCGCTTCAACATTATCTGTGGAATTGCTCGAGGTCTTCTCTATCTTCATCAAGATTCTAGATTGAGGATAATTCATAGAGACCTCAAAACAAGTAATGTTTTGCTTGATGACAAGCTAAATCCGAAAATATCAGATTTTGGCATTGCTAGAATCTTTGGAGGAGATCAGACAGAAGGCAACACAAAGCGAGTAGCTGGAACTTATGGCTACATGGCACCAGAATATGCTGCTGATGGACTTTTCTCTATGAAATCTGATGTTTTTAGTTTTGGTATTTTGTTGCTGGAGATTATAAGTGGAAAGAGAAGTAGAGGTTTTTATCTCGAAAACCACACTCCTAACCTTGTAACTCATGCATGGAGTCTTTGGAAAGAGGGAAGGGCTTTAGAACTGATTGACTCAAACATAGAGTACTCTTGTGTTCTATCAGAGGTATTGCGTTGCATCCATGTTAGTCTCTTATGTGTTCAGCAATACCCTGAGGATAGGCCTGTAATGTCTTCTGTGGTTCTAATGTTGGGAAGTGAGAGTGAATTAGCTGAGCCAAAAGAGCCTGGTTTTTATGTAAAAAAGGATTCGGATGCAGCAACTTCTTACTCAGGTAGAAGTGAAATGATCTCAACCAATGGAATAACTATCACCTTATTAGAAGCTCGATGA 2478 0.4003 MDVLSLLIIVAYILIPSLKFSIAVDTILLSQSISDGITLVSQGGKFELGFFSPENSNKRYLGIWYKNIQIQTVVWVANGVNAINDSSGILTLNSTCNLVLRQHDEVVWYTTSEKQAQNPVAQLLDSGNLVVRDKSEENPKAYLWQSFDYPSDTALPGMKLGWNLRIGLNWRMTSWKSPYDPSPGDFYWGSFLYNYPEVYLMKGTEKYVRIGPWNGLYFSGIPDQKPNPIYDFIFISNKDEMYYMYSLKNVSVISRLVVNQTTSMCYRYVWMEDEQIWKVYKSLPKDNCDYYRLCGAYGTCIITGSQICQCLRGFSPKSPEAWNSSDWTQGCVRNKPLNCTEKLKDGFVKVEGVKVPDTTQTLVDETIGLDECRFKCLNNCSCMAYTNSDVAGAGSGCVMWFGDLIDIRQFQDAGQELYIRMDASELGKEEQDGHKKELTIIVATTIAIISVMLFVGCCRIYIARRRITAENSDILELTEGDQNRGGSEDDLDLPFLDLSTIVTATDNFSIKNKIGEGGFGPVYKGKLVTGQEIAVKRLSRSSGQGMTEFKNEVKLIAKLQHRNLVKLLGCCIQGQDRMLVYEYMTNRSLDWLIFDESKSKLLDWPKRFNIICGIARGLLYLHQDSRLRIIHRDLKTSNVLLDDKLNPKISDFGIARIFGGDQTEGNTKRVAGTYGYMAPEYAADGLFSMKSDVFSFGILLLEIISGKRSRGFYLENHTPNLVTHAWSLWKEGRALELIDSNIEYSCVLSEVLRCIHVSLLCVQQYPEDRPVMSSVVLMLGSESELAEPKEPGFYVKKDSDAATSYSGRSEMISTNGITITLLEAR 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3789g00003 825 Pfam Domain of unknown function (DUF3403) 782 825 IPR021820 GO:0004674
Gabi3789g00003 825 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 584 787 - -
Gabi3789g00003 825 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 181 IPR036426 -
Gabi3789g00003 825 Pfam S-locus glycoprotein domain 209 318 IPR000858 GO:0048544
Gabi3789g00003 825 ProSiteProfiles Bulb-type lectin domain profile. 24 144 IPR001480 -
Gabi3789g00003 825 PIRSF SRK 1 825 IPR024171 GO:0004674
Gabi3789g00003 825 ProSiteProfiles Protein kinase domain profile. 508 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3789g00003 825 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 474 583 - -
Gabi3789g00003 825 CDD PAN_AP_plant 336 420 - -
Gabi3789g00003 825 SMART blect_4 30 150 IPR001480 -
Gabi3789g00003 825 SMART serkin_6 508 779 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3789g00003 825 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 20 147 - -
Gabi3789g00003 825 SUPERFAMILY Protein kinase-like (PK-like) 494 779 IPR011009 -
Gabi3789g00003 825 ProSiteProfiles EGF-like domain profile. 284 320 IPR000742 -
Gabi3789g00003 825 Gene3D Transferase(Phosphotransferase) domain 1 584 794 - -
Gabi3789g00003 825 Pfam D-mannose binding lectin 72 176 IPR001480 -
Gabi3789g00003 825 Gene3D Phosphorylase Kinase; domain 1 479 583 - -
Gabi3789g00003 825 CDD STKc_IRAK 514 779 - -
Gabi3789g00003 825 ProSitePatterns Serine/Threonine protein kinases active-site signature. 629 641 IPR008271 GO:0004672|GO:0006468
Gabi3789g00003 825 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 17 770 - -
Gabi3789g00003 825 Gene3D - 20 147 IPR036426 -
Gabi3789g00003 825 ProSiteProfiles PAN/Apple domain profile. 339 423 IPR003609 -
Gabi3789g00003 825 Pfam PAN-like domain 339 407 IPR003609 -
Gabi3789g00003 825 Pfam Protein tyrosine and serine/threonine kinase 509 777 IPR001245 GO:0004672|GO:0006468
Gabi3789g00003 825 CDD B_lectin 30 150 IPR001480 -
Gabi3789g00003 825 SMART ntp_6 342 421 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3789g00003 Gabi-Chr3789 37474 41392 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3789g00003 438 796 Receptor kinase-like Gene Family AT4G23230 53.889 4.07e-128 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi3789g00003 PK_Tyr_Ser-Thr 2.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3789g00003 - - gmx:100775648 1362.44