Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3789g00002 ATGACCTTGGCGTCTAAAGATGGAAGCTTTGAAATGGGTTTCTTCAGTGCAGGTAACAACAACACAAACCGCTACCTAGGAATATGGTATAAAAGTATCCCAGTTAGACCTGTTGTTTGGGTTGCAAACCGTGACAATCCTATCAAAGACAACTCCAGCAAGCTGATCATAAGCAAAGAGGGAAAACTTGTGATCCTTAACGAGGACGAAGTTCTTGTTTGGTCAGCAAACTCAACAACACAGACACGTGCAATGAGTCCAATTGCACAGCTTTTAGACTCAGGAAACTTAGTACTAAGAGATGAGGAAGACCAGAATCCACAAAACTACTTGTGGCAGAGCTTTGACTATCCTTGTGATACATTTTTGCCAGGAATGAAGATTGGATGGAACATGAAAACGGGTCTTAATCGTTATTTATCTGCATGGAAGAACTGGGATGACCCTTCTCCAGGGGATTTCACATGGGGTCTGGTACTTGGTAACACCCCCGAATTGGTTATGTGGAAGGGTGAGACAAAGTATTATAGGAGTGGCCCTTGGAATGGTGTTAGATTCAGTGGTAAAACCACACCCCTTTTCGAATTAGAATTTGTATCCAATGATGATGAGGTGTTTTACACATACAACATCAAGAATAAGTCAGTGGTTACAAGGGTTGTTCTAAACCAATCTGTTTATTCTCGTCAGCGTTATAATTGGATTGAAGAAAACCAGACTTGGAGGCTTTATTCTTCGGTGCCACGAGACAATTGTGACAGCTACAATCTTTGTGGTTCATATGGGAATTGTATAGTGAGTGAGTCACCACCCTGCCAGTGTCTAACAGGGTTCAAGCCAAAATCACAACAAAATTATGAGGCATTGGATTGGACCCAAGGATGTGTGCTTAGTGAACCATGGAGCTGTGGGGTCAAAAACCAAGATGGTTTTCAAAGATTTAGTGGGTTGAAATTGCCAGATACTACAAAGTCTTGGGTTAATGGAAATTTGACAATTGTGGATTGCAAGGCCAAATGCTGGGAAAACTGTTCTTGCACAGCCTATGCAAACTTAGATGTCAGGGGAGAAGGTAATGGTTGCATCATTTGGTTCGGAGCACTAATGGATTTCAGGGTTGCTTCGGTTCCTGGGCAAGATATATATATTCGAATGGCTACTTCAGAAACTGAAATAAAGGGAGGGCATAAGAAAAATGTTGTGGTGATAATTCCAGTTACCCTTCTGTTGATTGTGATTGTTTCCACTTTCACTTACATTTACTGGAGGAAAAGAAAGCATACTGAAAAAACCTTCGAAGAAAATAAAGATGAAGGCCATGAAGAAGATTTGGACCTACCTTTCTTTGATTTTGCTACAATAGTTCGTGCCACTAATGATTTCTCTAGTGACAAGAGGCTTGGCCAAGGTGGTTTTGGACCTGTGTATAGGGGTACACTAGCAGATGGACAAGAGATTGCTGCCAAGAGGCTTTCAAATGAATCTGGACAAGGAACTAAAGAATTCAAGAATGAAGTTATATTGTGTGCCAAACTTCAGCACCGAAATCTCGTTAAGGTTCTTGGTTGTTCCACCCAAGGAGAGGAAAAAGTGCTCATCTATGAATACATGCCTAATAAAAGCCTAGATTCCTTTCTGTTTGATTCTTCTCAAAGTGGACTCCTAGATTGGTCTAAGCGCTTTAACATTATATTTGGAATTGCTCGGGGGCTTCTTTATCTTCACCAAGATTCTAGATTACGGATCATACATAGAGATCTCAAAGCAAGTAATATTTTACTAGATAGTGACTTGAATCCAAAAATATCAGATTTTGGCGTGGCGCGAATGTTTAGTGGAAATCAAACTGAAGGGAATACAAAAATGGTGACAGGAACATATGGCTACTTAGCACCAGAATATGCATTTGATGGGATATTCTCCATCAAATCTGATGTATTTAGCTTTGGTGTCTTACTACTGGAAATAGTAAGTGGGAAGAAAAACACAGGAGTTTTCTATCCAAATCATGGATTTAATCTTTTAGGACATACATGGAGACTGTGGAAAGAGGATACTCCAATGAGATTAGTTGATGCTTCCTTAGGTGACGACTTTACCTTATCAGAAGTTTTACGCTGCATCCATGTTGGTCTTCTATGTGTGCAACTTCATCCTGAGGATAGGCCAAACATGGGATCAGTAATTTTGATGTTGAGCAGTGAAATTACTTTGCCACAGCCTAAGGAGCCTGGTTTCCTTATTGAAAAGATGTCGAATGCAGGGGAAACTTCATCTGGCAATCAAATGAACTCTTCCAATAATAAGTTAACTGTGACACTGTTAGAAGCTAGATAG 2337 0.4027 MTLASKDGSFEMGFFSAGNNNTNRYLGIWYKSIPVRPVVWVANRDNPIKDNSSKLIISKEGKLVILNEDEVLVWSANSTTQTRAMSPIAQLLDSGNLVLRDEEDQNPQNYLWQSFDYPCDTFLPGMKIGWNMKTGLNRYLSAWKNWDDPSPGDFTWGLVLGNTPELVMWKGETKYYRSGPWNGVRFSGKTTPLFELEFVSNDDEVFYTYNIKNKSVVTRVVLNQSVYSRQRYNWIEENQTWRLYSSVPRDNCDSYNLCGSYGNCIVSESPPCQCLTGFKPKSQQNYEALDWTQGCVLSEPWSCGVKNQDGFQRFSGLKLPDTTKSWVNGNLTIVDCKAKCWENCSCTAYANLDVRGEGNGCIIWFGALMDFRVASVPGQDIYIRMATSETEIKGGHKKNVVVIIPVTLLLIVIVSTFTYIYWRKRKHTEKTFEENKDEGHEEDLDLPFFDFATIVRATNDFSSDKRLGQGGFGPVYRGTLADGQEIAAKRLSNESGQGTKEFKNEVILCAKLQHRNLVKVLGCSTQGEEKVLIYEYMPNKSLDSFLFDSSQSGLLDWSKRFNIIFGIARGLLYLHQDSRLRIIHRDLKASNILLDSDLNPKISDFGVARMFSGNQTEGNTKMVTGTYGYLAPEYAFDGIFSIKSDVFSFGVLLLEIVSGKKNTGVFYPNHGFNLLGHTWRLWKEDTPMRLVDASLGDDFTLSEVLRCIHVGLLCVQLHPEDRPNMGSVILMLSSEITLPQPKEPGFLIEKMSNAGETSSGNQMNSSNNKLTVTLLEAR 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3789g00002 778 ProSiteProfiles Bulb-type lectin domain profile. 1 112 IPR001480 -
Gabi3789g00002 778 Pfam S-locus glycoprotein domain 176 282 IPR000858 GO:0048544
Gabi3789g00002 778 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1 115 - -
Gabi3789g00002 778 Gene3D - 1 115 IPR036426 -
Gabi3789g00002 778 SUPERFAMILY alpha-D-mannose-specific plant lectins 38 149 IPR036426 -
Gabi3789g00002 778 CDD STKc_IRAK 467 732 - -
Gabi3789g00002 778 PIRSF SRK 1 778 IPR024171 GO:0004674
Gabi3789g00002 778 Gene3D Transferase(Phosphotransferase) domain 1 537 740 - -
Gabi3789g00002 778 Pfam D-mannose binding lectin 38 144 IPR001480 -
Gabi3789g00002 778 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 2 723 - -
Gabi3789g00002 778 Pfam Domain of unknown function (DUF3403) 733 778 IPR021820 GO:0004674
Gabi3789g00002 778 ProSitePatterns Serine/Threonine protein kinases active-site signature. 582 594 IPR008271 GO:0004672|GO:0006468
Gabi3789g00002 778 SMART ntp_6 306 385 IPR003609 -
Gabi3789g00002 778 Gene3D Phosphorylase Kinase; domain 1 421 536 - -
Gabi3789g00002 778 SMART serkin_6 461 737 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3789g00002 778 SUPERFAMILY Protein kinase-like (PK-like) 445 732 IPR011009 -
Gabi3789g00002 778 Gene3D Hepatocyte Growth Factor 302 380 - -
Gabi3789g00002 778 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 537 740 - -
Gabi3789g00002 778 ProSiteProfiles Protein kinase domain profile. 461 738 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3789g00002 778 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 424 536 - -
Gabi3789g00002 778 CDD B_lectin 2 118 IPR001480 -
Gabi3789g00002 778 CDD PAN_AP_plant 302 386 - -
Gabi3789g00002 778 SMART blect_4 2 118 IPR001480 -
Gabi3789g00002 778 ProSiteProfiles PAN/Apple domain profile. 303 386 IPR003609 -
Gabi3789g00002 778 Pfam PAN-like domain 303 370 IPR003609 -
Gabi3789g00002 778 Pfam Protein tyrosine and serine/threonine kinase 464 663 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3789g00002 Gabi-Chr3789 9351 12755 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3789g00002 393 747 Receptor kinase-like Gene Family AT4G23190 53.203 1.58e-130 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi3789g00002 PK_Tyr_Ser-Thr 1.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3789g00002 - - gmx:100790436 1026.93