Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3789g00001 ATGACCTTGGCGTCTAAAGATGGAAGCTTTGAAATGGGTTTCTTCAGTGCAGGTAACAACAACACAAACCGCTACCTAGGAATATGGTATAAAAGTATCCCAGTTAGACCTGTTGTTTGGGTTGCAAACCGTGACAATCCTATCAAAGACAACTCCAGCAAGCTGATCATAAGCAAAGAGGGAAAACTTGTGATCCTTAACGAGGACGAAGTTCTTGTTTGGTCAGCAAACTCAACAACACAGACACGTGCAATGAGTCCAATTGCACAGCTTTTAGACTCAGGAAACTTAGTACTAAGAGATGAGGAAGACCAGAATCCACAAAACTACTTGTGGCAGAGCTTTGACTATCCTTGTGATACATTTTTGCCAGGAATGAAGATTGGATGGAACATGAAAACGGGTCTTAATCGTTATTTATCTGCATGGAAGAACTGGGATGACCCTTCTCCAGGGGATTTCACATGGGGTCTGGTACTTGGTAACACCCCCGAATTGGTTATGTGGAAGGGTGAGACAAAGTATTATAGGAGTGGCCCTTGGAATGGTGTTAGATTCAGTGGTAAAACCACACCCCTTTTCGAATTAGAATTTGTATCCAATGATGATGAGGTGTTTTACACATACAACATCAAGAATAAGTCAGTGGTTACAAGGGTTGTTCTAAACCAATCTGTTTATTCTCGTCAGCGTTATAATTGGATTGAAGAAAACCAGACTTGGAGGCTTTATTCTTCGGTGCCACGAGACAATTGTGACAGCTACAATCTTTGTGGTTCATATGGGAATTGTATAGTGAGTGAGTCACCACCCTGCCAGTGTCTAACAGGGTTCAAGCCAAAATCACAACAAAATTATGAGGCATTGGATTGGACCCAAGGATGTGTGCTTAGTGAACCATGGAGCTGTGGGGTCAAAAACCAAGATGGTTTTCAAAGATTTAGTGGGTTGAAATTGCCAGATACTACAAAGTCTTGGGTTAATGGAAATTTGACAATTGTGGATTGCAAGGCCAAATGCTGGGAAAACTGTTCTTGCACAGCCTATGCAAACTTAGATGTCAGGGGAGAAGGTAATGGTTGCATCATTTGGTTCGGAGCACTAATGGATTTCAGGGTTGCTTCGGTTCCTGGGCAAGATATATATATTCGAATGGCTACTTCAGAAACTGAAAAAACCTTCGAAGAAAATAAAGATGAAGGCCATGAAGAAGATTTGGACCTACCTTTCTTTGATTTTGCTACAATAGTTCGTGCCACTAATGATTTCTCTAGTGACAAGAGGCTTGGCCAAGGTGGTTTTGGACCTGTGTATAGGGGTACACTAGCAGATGGACAAGAGATTGCTGCCAAGAGGCTTTCAAATGAATCTGGACAAGGAACTAAAGAATTCAAGAATGAAGTTATATTGTGTGCCAAACTTCAGCACCGAAATCTCGTTAAGGTTCTTGGTTGTTCCACCCAAGGAGAGGAAAAAGTGCTCATCTATGAATACATGCCTAATAAAAGCCTAGATTCCTTTCTGTTTGATTCTTCTCAAAGTGGACTCCTAGATTGGTCTAAGCGCTTTAACATTATATTTGGAATTGCTCGGGGGCTTCTTTATCTTCACCAAGATTCTAGATTACGGATCATACATAGAGATCTCAAAGCAAGTAATATTTTACTAGATAGTGACTTGAATCCAAAAATATCAGATTTTGGCGTGGCGCGAATGTTTAGTGGAAATCAAACTGAAGGGAATACAAAAATGGTGACAGGAACATATGGCTACTTAGCACCAGAATATGCATTTGATGGGATATTCTCCATCAAATCTGATGTATTTAGCTTTGGTGTCTTACTACTGGAAATAGTAAGTGGGAAGAAAAACACAGGAGTTTTCTATCCAAATCATGGATTTAATCTTTTAGGACATACATGGAGACTGTGGAAAGAGGATACTCCAATGAGATTAGTTGATGCTTCCTTAGGTGACGACTTTACCTTATCAGAAGTTTTACGCTGCATCCATGTTGGTCTTCTATGTGTGCAACTTCATCCTGAGGATAGGCCAAACATGGGATCAGTAATTTTGATGTTGAGCAGTGAAATTACTTTGCCACAGCCTAAGGAGCCTGGTTTCCTTATTGAAAAGATGTCGAATGCAGGGGAAACTTCATCTGGCAATCAAATGAACTCTTCCAATAATAAGTTAACTGTGACACTGTTAGAAGCTAGATAG 2223 0.4049 MTLASKDGSFEMGFFSAGNNNTNRYLGIWYKSIPVRPVVWVANRDNPIKDNSSKLIISKEGKLVILNEDEVLVWSANSTTQTRAMSPIAQLLDSGNLVLRDEEDQNPQNYLWQSFDYPCDTFLPGMKIGWNMKTGLNRYLSAWKNWDDPSPGDFTWGLVLGNTPELVMWKGETKYYRSGPWNGVRFSGKTTPLFELEFVSNDDEVFYTYNIKNKSVVTRVVLNQSVYSRQRYNWIEENQTWRLYSSVPRDNCDSYNLCGSYGNCIVSESPPCQCLTGFKPKSQQNYEALDWTQGCVLSEPWSCGVKNQDGFQRFSGLKLPDTTKSWVNGNLTIVDCKAKCWENCSCTAYANLDVRGEGNGCIIWFGALMDFRVASVPGQDIYIRMATSETEKTFEENKDEGHEEDLDLPFFDFATIVRATNDFSSDKRLGQGGFGPVYRGTLADGQEIAAKRLSNESGQGTKEFKNEVILCAKLQHRNLVKVLGCSTQGEEKVLIYEYMPNKSLDSFLFDSSQSGLLDWSKRFNIIFGIARGLLYLHQDSRLRIIHRDLKASNILLDSDLNPKISDFGVARMFSGNQTEGNTKMVTGTYGYLAPEYAFDGIFSIKSDVFSFGVLLLEIVSGKKNTGVFYPNHGFNLLGHTWRLWKEDTPMRLVDASLGDDFTLSEVLRCIHVGLLCVQLHPEDRPNMGSVILMLSSEITLPQPKEPGFLIEKMSNAGETSSGNQMNSSNNKLTVTLLEAR 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3789g00001 740 ProSiteProfiles Bulb-type lectin domain profile. 1 112 IPR001480 -
Gabi3789g00001 740 CDD STKc_IRAK 429 694 - -
Gabi3789g00001 740 Pfam Domain of unknown function (DUF3403) 695 740 IPR021820 GO:0004674
Gabi3789g00001 740 Pfam D-mannose binding lectin 38 144 IPR001480 -
Gabi3789g00001 740 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1 115 - -
Gabi3789g00001 740 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 499 702 - -
Gabi3789g00001 740 PIRSF SRK 1 404 IPR024171 GO:0004674
Gabi3789g00001 740 PIRSF SRK 387 740 IPR024171 GO:0004674
Gabi3789g00001 740 Pfam PAN-like domain 303 370 IPR003609 -
Gabi3789g00001 740 Pfam S-locus glycoprotein domain 176 282 IPR000858 GO:0048544
Gabi3789g00001 740 SMART ntp_6 306 385 IPR003609 -
Gabi3789g00001 740 ProSiteProfiles Protein kinase domain profile. 423 700 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3789g00001 740 Gene3D - 1 115 IPR036426 -
Gabi3789g00001 740 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 2 685 - -
Gabi3789g00001 740 Pfam Protein tyrosine and serine/threonine kinase 426 625 IPR001245 GO:0004672|GO:0006468
Gabi3789g00001 740 Gene3D Transferase(Phosphotransferase) domain 1 499 702 - -
Gabi3789g00001 740 ProSitePatterns Serine/Threonine protein kinases active-site signature. 544 556 IPR008271 GO:0004672|GO:0006468
Gabi3789g00001 740 SUPERFAMILY Protein kinase-like (PK-like) 407 694 IPR011009 -
Gabi3789g00001 740 CDD B_lectin 2 118 IPR001480 -
Gabi3789g00001 740 CDD PAN_AP_plant 302 386 - -
Gabi3789g00001 740 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 387 498 - -
Gabi3789g00001 740 SMART blect_4 2 118 IPR001480 -
Gabi3789g00001 740 Gene3D Hepatocyte Growth Factor 302 380 - -
Gabi3789g00001 740 Gene3D Phosphorylase Kinase; domain 1 383 498 - -
Gabi3789g00001 740 ProSiteProfiles PAN/Apple domain profile. 303 386 IPR003609 -
Gabi3789g00001 740 SUPERFAMILY alpha-D-mannose-specific plant lectins 38 149 IPR036426 -
Gabi3789g00001 740 SMART serkin_6 423 699 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3789g00001 Gabi-Chr3789 9350 12755 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3789g00001 391 709 Receptor kinase-like Gene Family AT4G23190 55.828 1.06e-125 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi3789g00001 PK_Tyr_Ser-Thr 1.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3789g00001 - - ahf:112775289 1021.92