Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3788g00062 ATGGCAACAACGTCTTCGCAAGCGCAGGGTTATCATCAACCTTCAACTATCGAAGAAGTTCGAACCCTTTGGATTGGGGATTTACAGTATTGGGTCGACGAAAACTATCTCAGTCACTGTTTCGCTCACACAGGCGAGGTCGTTTCGATCAAAATCATACGCAACAAGATGACAGGGCAACCAGAGGGTTATGGTTTTGTTGAATTCGTATCGCACGGTGCAGCGGAAAGGGTTCTTCAGAGTTACAACGGAACACAGATGCCTGGAACTGAACAAACTTTCAGGCTTAATTGGGCTTCTTTCGGTATCGGTGAACGCAGGCCCGATGCGGGCCCAGAACACTCGATCTTCGTTGGTGATCTTGCTCCTGACGTCACCGATTATCTCCTTCAGGAGACTTTTCGGGCCCATTACCCTTCCGTTAGAGGTGCTAAGGTTGTTACTGATCCTAACACGGGCCGTTCCAAGGGTTATGGCTTTGTTAAATTCTCTGATGAGAATGAAAGGAATCGCGCCATGACTGAGATGAACGGTGTTTATTGCTCCACTAGACCCATGCGTATCAGTGCTGCTACACCTAAGAAAACCACTGTTTTTCAACACCAATATGCTGCTGCACCTGCTCCTGCACCTGCACCTGCACCTGCTGCACCTAAAGCGATATATCCAATTCCGGCGTATACTACACCGGTGAATACAGTTGCACCAGATTATGATTCAAATAACACTACCATTTTTGTTGGTAATTTGGATCTTAATGTCTCGGAGGAGGAGCTGAAGCAAACCTTTCTGCAATTTGGAGAAATTGTCTCTGTCAAAATTCAGGCTGGGAAAGGATGTGGTTTTGTTCAATTTGGGACTAGAGCATCTGCTGAAGAAGCCATTCAGAAAATGCAAGGAAAGATTATAGGTCAACAAGTGATCAGAGTTTCTTGGGGTAGGACCCTAACTGCTAGACAGGACTTACCTGGTGGCTGGGGACAGATGGATCCAAGTCAATGGAGTGCCTATTATGGGTATGGACAGGGTTATGAAGCCTATGCTTATGGGGCTACTCAAGATCCTTCTTTGTATGCATATGGGGCATATGCTGGCTATGCACAATACCCCCAACAGGTTGAAGGGGCTCAAGACATGTCAGCTATGTCTATGCCTACCATGGAACAAAGGGAGGAGTTGTATGATCCCCTGGCAATGCCTGATGTTGATAAGTTAAATGCTGCATATCTCTCAGTACACGGAAGTGCCATTTTAGGGCGGTCCCTCTGGCACAAAAACTATTCGGCATCCTTGCAGCAAGCTTAG 1305 0.4674 MATTSSQAQGYHQPSTIEEVRTLWIGDLQYWVDENYLSHCFAHTGEVVSIKIIRNKMTGQPEGYGFVEFVSHGAAERVLQSYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTDYLLQETFRAHYPSVRGAKVVTDPNTGRSKGYGFVKFSDENERNRAMTEMNGVYCSTRPMRISAATPKKTTVFQHQYAAAPAPAPAPAPAAPKAIYPIPAYTTPVNTVAPDYDSNNTTIFVGNLDLNVSEEELKQTFLQFGEIVSVKIQAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVIRVSWGRTLTARQDLPGGWGQMDPSQWSAYYGYGQGYEAYAYGATQDPSLYAYGAYAGYAQYPQQVEGAQDMSAMSMPTMEQREELYDPLAMPDVDKLNAAYLSVHGSAILGRSLWHKNYSASLQQA 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3788g00062 434 SUPERFAMILY RNA-binding domain, RBD 107 199 IPR035979 GO:0003676
Gabi3788g00062 434 FunFam polyadenylate-binding protein RBP45 226 322 - -
Gabi3788g00062 434 Gene3D - 229 320 IPR012677 -
Gabi3788g00062 434 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 243 315 IPR000504 GO:0003723
Gabi3788g00062 434 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 14 319 - -
Gabi3788g00062 434 CDD RRM1_SECp43_like 22 102 - -
Gabi3788g00062 434 SUPERFAMILY RNA-binding domain, RBD 223 334 IPR035979 GO:0003676
Gabi3788g00062 434 Gene3D - 102 202 IPR012677 -
Gabi3788g00062 434 SMART rrm1_1 244 311 IPR000504 GO:0003723
Gabi3788g00062 434 SMART rrm1_1 115 189 IPR000504 GO:0003723
Gabi3788g00062 434 SMART rrm1_1 22 97 IPR000504 GO:0003723
Gabi3788g00062 434 FunFam Polyadenylate-binding protein RBP47B 20 100 - -
Gabi3788g00062 434 SUPERFAMILY RNA-binding domain, RBD 12 89 IPR035979 GO:0003676
Gabi3788g00062 434 FunFam Polyadenylate-binding protein RBP47B 102 204 - -
Gabi3788g00062 434 CDD RRM2_SECp43_like 113 192 - -
Gabi3788g00062 434 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 21 101 IPR000504 GO:0003723
Gabi3788g00062 434 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 116 181 IPR000504 GO:0003723
Gabi3788g00062 434 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 23 91 IPR000504 GO:0003723
Gabi3788g00062 434 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 245 309 IPR000504 GO:0003723
Gabi3788g00062 434 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 114 193 IPR000504 GO:0003723
Gabi3788g00062 434 Gene3D - 20 100 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3788g00062 Gabi-Chr3788 560983 564573 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3788g00062 20 332 Eukaryotic Initiation Factors Gene Family AT2G23350 27.019 5.71e-25 105