Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3788g00061 ATGGCAACAACGTCTTCGCAAGCGCAGGGTTATCATCAACCTTCAACTATCGAAGAAGTTCGAACCCTTTGGATTGGGGATTTACAGTATTGGGTCGACGAAAACTATCTCAGTCACTGTTTCGCTCACACAGGCGAGGTCGTTTCGATCAAAATCATACGCAACAAGATGACAGGGCAACCAGAGGGTTATGGTTTTGTTGAATTCGTATCGCACGGTGCAGCGGAAAGGGTTCTTCAGAGTTACAACGGAACACAGATGCCTGGAACTGAACAAACTTTCAGGCTTAATTGGGCTTCTTTCGGTATCGGTGAACGCAGGCCCGATGCGGGCCCAGAACACTCGATCTTCGTTGGTGATCTTGCTCCTGACGTCACCGATTATCTCCTTCAGGAGACTTTTCGGGCCCATTACCCTTCCGTTAGAGGTGCTAAGGTTGTTACTGATCCTAACACGGGCCGTTCCAAGGGTTATGGCTTTGTTAAATTCTCTGATGAGAATGAAAGGAATCGCGCCATGACTGAGATGAACGGTGTTTATTGCTCCACTAGACCCATGCGTATCAGTGCTGCTACACCTAAGAAAACCACTGTTTTTCAACACCAATATGCTGCTGCACCTGCTCCTGCACCTGCACCTGCACCTGCTGCACCTAAAGTTGCACCAGATTATGATTCAAATAACACTACCATTTTTGTTGGTAATTTGGATCTTAATGTCTCGGAGGAGGAGCTGAAGCAAACCTTTCTGCAATTTGGAGAAATTGTCTCTGTCAAAATTCAGGCTGGGAAAGGATGTGGTTTTGTTCAATTTGGGACTAGAGCATCTGCTGAAGAAGCCATTCAGAAAATGCAAGGAAAGATTATAGGTCAACAAGTGATCAGAGTTTCTTGGGGTAGGACCCTAACTGCTAGACAGGACTTACCTGGTGGCTGGGGACAGATGGATCCAAGTCAATGGAGTGCCTATTATGGGTATGGACAGGGTTATGAAGCCTATGCTTATGGGGCTACTCAAGATCCTTCTTTGTATGCATATGGGGCATATGCTGGCTATGCACAATACCCCCAACAGGTTGAAGGGGCTCAAGACATGTCAGCTATGTCTATGCCTACCATGGAACAAAGGGAGGAGTTGTATGATCCCCTGGCAATGCCTGATGTTGATAAGTTAAATGCTGCATATCTCTCAGTACACGGAAGTGCCATTTTAGGGCGGTCCCTCTGGCACAAAAACTATTCGGCATCCTTGCAGCAAGCTTAG 1263 0.4679 MATTSSQAQGYHQPSTIEEVRTLWIGDLQYWVDENYLSHCFAHTGEVVSIKIIRNKMTGQPEGYGFVEFVSHGAAERVLQSYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTDYLLQETFRAHYPSVRGAKVVTDPNTGRSKGYGFVKFSDENERNRAMTEMNGVYCSTRPMRISAATPKKTTVFQHQYAAAPAPAPAPAPAAPKVAPDYDSNNTTIFVGNLDLNVSEEELKQTFLQFGEIVSVKIQAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVIRVSWGRTLTARQDLPGGWGQMDPSQWSAYYGYGQGYEAYAYGATQDPSLYAYGAYAGYAQYPQQVEGAQDMSAMSMPTMEQREELYDPLAMPDVDKLNAAYLSVHGSAILGRSLWHKNYSASLQQA 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3788g00061 420 CDD RRM1_SECp43_like 22 102 - -
Gabi3788g00061 420 SUPERFAMILY RNA-binding domain, RBD 106 199 IPR035979 GO:0003676
Gabi3788g00061 420 Gene3D - 20 100 IPR012677 -
Gabi3788g00061 420 FunFam polyadenylate-binding protein RBP45 214 308 - -
Gabi3788g00061 420 CDD RRM2_SECp43_like 113 192 - -
Gabi3788g00061 420 SMART rrm1_1 230 297 IPR000504 GO:0003723
Gabi3788g00061 420 SMART rrm1_1 115 189 IPR000504 GO:0003723
Gabi3788g00061 420 SMART rrm1_1 22 97 IPR000504 GO:0003723
Gabi3788g00061 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 21 101 IPR000504 GO:0003723
Gabi3788g00061 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 114 193 IPR000504 GO:0003723
Gabi3788g00061 420 Gene3D - 101 203 IPR012677 -
Gabi3788g00061 420 FunFam Polyadenylate-binding protein RBP47B 20 100 - -
Gabi3788g00061 420 FunFam Polyadenylate-binding protein RBP47B 102 204 - -
Gabi3788g00061 420 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 14 305 - -
Gabi3788g00061 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 229 301 IPR000504 GO:0003723
Gabi3788g00061 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 231 295 IPR000504 GO:0003723
Gabi3788g00061 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 116 181 IPR000504 GO:0003723
Gabi3788g00061 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 23 91 IPR000504 GO:0003723
Gabi3788g00061 420 SUPERFAMILY RNA-binding domain, RBD 12 89 IPR035979 GO:0003676
Gabi3788g00061 420 SUPERFAMILY RNA-binding domain, RBD 215 320 IPR035979 GO:0003676
Gabi3788g00061 420 Gene3D - 216 306 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3788g00061 Gabi-Chr3788 560982 564573 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3788g00061 20 318 Eukaryotic Initiation Factors Gene Family AT2G23350 28.065 2.63e-26 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3788g00061 - - tpra:123894020 689.108