Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3788g00060 ATGGCTGCAACTCCTACCAACTCTTTTCAAACTCCCTCAAAACCTAAGTTGCGATCGCAATCCAATGCTAAATCCTCACCAGCTATAGCCTCCTCCGTTACCCCACAACCCCTACCTCCTCGCAGATCCACGCGCCCAAAGTCCCTTCCATTCGATTCTCCCAAAAATTCTCATGGCGTCAATGCATCTTTTGAAAATTCACGAGCAACTCCGAAAAGAGGGAAAGCCAGGGAGAATCTCGATCCGGCTAGGTCGAGGACTCGTCGATCCATCGACTACGTTGATGATTCTGGTAAGGACAAAGTTATAACCCGTACTAGTGCAGCTAGAGGAAGTGGTTCGGTTGATATAGGTGGATCTGGCACGAAGGGTGAAGCATTGAAGAAGAGAAATGGGAAGGGTGCAGTTGAAGTCTCCTTCGCTCCAGTGTCCCCTGATAAAAAGGAAGCTAAGAAGAGGAATAGGGAGGGTGAAAGAACGGTTGTTACTAGAGCTTTGACTGCGAAAAAAGGGAAATCAGAGAACCTGAAAAAGAGTTCAAGGTCGCCCAAGAGCCGTGTGTATTTTAAAAGAGTTGTTTATGATGGGGGCGAGTTTGAAGTGGGGGATGATGTTTATGTGAAAAGGAGAGAAGATTCAACCTCGGATGACGAATATCATGAAGTGGAGGAGTGTAGATTGTGTTTTTGTTCAAGCAACGAGGTCATGATTGAGTGTGATGCTTGTTTAGGTGGGTTTCATTTGAAATGCTTGACGCCACCATTAAAGGACGTTCCTGAAGGGGATTGGATATGTGGGTTCTGTGAGGCTCGTAAGATGGGTAAGGAGGTTAAATTTCCAAAGGCTCCAGAGGGTAAGAAACTAGTTAGGACAATGAGGCAGAAGCTTCTTTCAAGTGATTTGTGGGCTGCTCATATTGAGAGTATATGGAAAGAAGTAGATGGCAATTATTGGTGTCGGGTACGGTGGTATACAATTCCCGAAGAGACTGCTGCTGGGCGACAACCGCATAACCTGAGCAGGGAGCTCTATCGAACTAATGATTTTGCAGACATCGAGATGGAATCTGTCCTTAGACATTGCTATGTCATGATCCCCAAAGAATACGCTAAGGCTGGCAATGAGGGAGATGATGTTTTCTTGTGCGAATATGAGTATGACATCCATTGGCACAGTTTCAAACGTCTTGCTGATATTGACAATGAAAGAGAGAATGGTGAAGAGACTGACAGTGACGAAGACTGGAATCTTTACAAGGAACCAGACTCTGATTCAGATGAAGAAGATGGTGAATATGAAGAGGAGAATTTTAAAAATGTGCAATCTCAGCCATCAACAGGCCATCAATTAGCCGCAAATCTGCACAAGGGACGGTTCTTTGGACTTCAGAAGATAGGCACACAAAAAATTCCACAGCATGTAAGGTCTCACAAACAGACAGATCTCGAGAGAGCAAAAGCTACACTGTTGTTAGCATCGTTGCCTAAATCTTTACCTTGTAGAAATAAAGAAGTGGAGGAGATAACTTCATTCATTAAAGGTGCTATTTGTGACAATCAATGTCTGGGGCGTTGCCTCTACATTCATGGTGTTCCGGGAACTGGCAAGACAATGAGTGTACTAGCAGTAATGAGGAGTTTGAGGTCAGAAGTTGATGCGGGAAACATCAAACCCTACTGTTTTGTGGAGATAAATGGTCTAAAATTGGCATCAGCAGAGAATATTTATAGGGTCATATATGAGGCATTAAATGGACACAGGGTCAGCTGGAAAAAGGCTCTCCACTTGTTAAATGAGAGATTTGTAGAAGGGAAGAAAACTGGAGAAGAGGCTGACCGGCCATGTATTTTGCTTATTGATGAACTTGATCTTCTTGTAACCAGAAACCAGTCGGTTCTGTATAATATTCTTGACTGGCCTACTAAGCCACATTCCAAACTAATTGTGATAGGGATAGCAAATACTATGGATCTTCCAGAGAAGTTACTTCCTCGTATATCAAGCCGAATGGGAATACAGAGACTTTGCTTTGGCCCATATAATTATCAGCAGCTTCAAGAAATCATTTTGAGTCGTCTCAAGGGAATTGATGTATTTGAAAAGCAAGCCATAGAATTTGCTTCAAGAAAGGTTGCAGCGATCTCGGGAGATGCTCGACGCGCTTTGGAGATATGCAGACGTGCAGCTGAAATAGCAGATTATCGTATGAAGAAGCTAATTTCGAATCCTGATTTTGTCACTGCAGGAAAGGGACTTGTTGGTATGGCAGATGTTGAAGCAGCCATTCAAGAAATGTTTCAAGCACCTCATATTCAAGTGATGAAAAGCTGTTCCAGACTTAGCAAAATCTTCCTGACAGCTATGGTGCACGAGCTTTATAAAACAGGAATGGGGGAAACCACTTTTGAAAAGTTGGCAATGGCGGTTTCGTGTCTCTGTACCAGCAACGGAGAAGTGTTTCCTGGATATGATACTCTCCTGCAAGTTGGCTGTAAGCTAGGCGAATGCAGGGTTATTTTATGTGAAGCTGGTTCCAAGCACAGGTTGCAAAAATTACAGCTCAATTTCCCGAGCGATGATGTTTCCTTTGCGCTGAGAGACGGCAAAGATGTACCGTGGTTGTCGAAGTATTTAATGTAG 2640 0.436 MAATPTNSFQTPSKPKLRSQSNAKSSPAIASSVTPQPLPPRRSTRPKSLPFDSPKNSHGVNASFENSRATPKRGKARENLDPARSRTRRSIDYVDDSGKDKVITRTSAARGSGSVDIGGSGTKGEALKKRNGKGAVEVSFAPVSPDKKEAKKRNREGERTVVTRALTAKKGKSENLKKSSRSPKSRVYFKRVVYDGGEFEVGDDVYVKRREDSTSDDEYHEVEECRLCFCSSNEVMIECDACLGGFHLKCLTPPLKDVPEGDWICGFCEARKMGKEVKFPKAPEGKKLVRTMRQKLLSSDLWAAHIESIWKEVDGNYWCRVRWYTIPEETAAGRQPHNLSRELYRTNDFADIEMESVLRHCYVMIPKEYAKAGNEGDDVFLCEYEYDIHWHSFKRLADIDNERENGEETDSDEDWNLYKEPDSDSDEEDGEYEEENFKNVQSQPSTGHQLAANLHKGRFFGLQKIGTQKIPQHVRSHKQTDLERAKATLLLASLPKSLPCRNKEVEEITSFIKGAICDNQCLGRCLYIHGVPGTGKTMSVLAVMRSLRSEVDAGNIKPYCFVEINGLKLASAENIYRVIYEALNGHRVSWKKALHLLNERFVEGKKTGEEADRPCILLIDELDLLVTRNQSVLYNILDWPTKPHSKLIVIGIANTMDLPEKLLPRISSRMGIQRLCFGPYNYQQLQEIILSRLKGIDVFEKQAIEFASRKVAAISGDARRALEICRRAAEIADYRMKKLISNPDFVTAGKGLVGMADVEAAIQEMFQAPHIQVMKSCSRLSKIFLTAMVHELYKTGMGETTFEKLAMAVSCLCTSNGEVFPGYDTLLQVGCKLGECRVILCEAGSKHRLQKLQLNFPSDDVSFALRDGKDVPWLSKYLM 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3788g00060 879 FunFam Origin recognition complex subunit 1 675 767 - -
Gabi3788g00060 879 MobiDBLite consensus disorder prediction 144 159 - -
Gabi3788g00060 879 MobiDBLite consensus disorder prediction 49 68 - -
Gabi3788g00060 879 ProSiteProfiles Zinc finger PHD-type profile. 222 271 IPR019787 -
Gabi3788g00060 879 Pfam BAH domain 305 394 IPR001025 GO:0003682
Gabi3788g00060 879 ProSiteProfiles BAH domain profile. 280 397 IPR001025 GO:0003682
Gabi3788g00060 879 SMART BAH_4 256 397 IPR001025 GO:0003682
Gabi3788g00060 879 Gene3D - 676 766 - -
Gabi3788g00060 879 MobiDBLite consensus disorder prediction 70 103 - -
Gabi3788g00060 879 MobiDBLite consensus disorder prediction 1 38 - -
Gabi3788g00060 879 FunFam Origin recognition complex subunit 1 288 481 - -
Gabi3788g00060 879 ProSitePatterns Zinc finger PHD-type signature. 225 268 IPR019786 -
Gabi3788g00060 879 Gene3D - 478 675 IPR027417 -
Gabi3788g00060 879 FunFam Origin recognition complex subunit 1 479 678 - -
Gabi3788g00060 879 MobiDBLite consensus disorder prediction 403 447 - -
Gabi3788g00060 879 SMART AAA_5 522 676 IPR003593 GO:0016887
Gabi3788g00060 879 MobiDBLite consensus disorder prediction 403 434 - -
Gabi3788g00060 879 Pfam AAA lid domain 700 733 IPR041083 -
Gabi3788g00060 879 SUPERFAMILY FYVE/PHD zinc finger 211 274 IPR011011 -
Gabi3788g00060 879 Gene3D - 167 413 IPR043151 -
Gabi3788g00060 879 MobiDBLite consensus disorder prediction 1 159 - -
Gabi3788g00060 879 Pfam ATPase family associated with various cellular activities (AAA) 527 672 IPR003959 GO:0005524|GO:0016887
Gabi3788g00060 879 SMART PHD_3 227 269 IPR001965 -
Gabi3788g00060 879 FunFam Origin recognition complex subunit 1 220 287 - -
Gabi3788g00060 879 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 329 873 - -
Gabi3788g00060 879 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 212 291 IPR013083 -
Gabi3788g00060 879 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 492 744 IPR027417 -
Gabi3788g00060 879 Pfam PHD-finger 228 270 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3788g00060 Gabi-Chr3788 545393 558809 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3788g00060 126 878 Core DNA Replication Machinery Family AT4G14700 66.447 0.0 1007
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gabi3788g00060 AAA 3.7e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3788g00060 K02603 - gmx:100814940 1388.24