Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3788g00059 ATGAGGAAGCCAGAGCAATCTAGTAAGAACAACAACAACAAGCTTAGAAAGGGTTTGTGGTCACCAGAAGAGGATGACAAGCTCATGAACTACATGCTAAACAATGGACAAGGTTGTTGGAGTGATGTGGCAAGAAATGCTGGCTTGTTAAGGTGTGGGAAAAGTTGTCGACTTCGATGGATCAATTACTTGAGGCCTGATCTTAAAAGAGGTGCTTTCTCACCCCAAGAAGAGGAACTCATCATCCATTTGCATTCCCTTCTTGGCAACAGATGGTCACAAATAGCGGCACGCTTGCCTGGCCGAACTGACAATGAAATCAAAAATTTTTGGAATTCAACTATAAAGAAAAGGCTCAAGAACTTGTCAACCACGACCACAACCTCAACCTCACCAAATGCAAGCGAGTCAACGTCTGAGCTTAATAAAGACATCAATATGGGAGGGTTTATTTCAACACAATACCAACATGTAGGCTTTATGCCTATGTTCAACTCATCTCCATCACCATCAATGCAAACCACAGTTTTCAATAGCATGATTGAAAGGTTTCCAATGCTGGAGCATGGAACAAACATGCCAAGTGCTGGAGGGTACTTCAACGGGACTACAGGGGCATGCTTCTCACAAAGTGGAGGTGACAACAAAGGTTCTTATATAGAAAATGGAGTATTTGGGAGTGTAAATATTGGGGTAGAAGTTGATTTGTTTGTTCCTCCTCTAGAGAATAGTACGTGCAAGAAAGAAACTAACAATACTTACTTTGATGACAATAATAGAGCTGAAAATAGGGTTGGTGTGGAGAATTTATTTGAAGAAGAGTTAACCATGGGAGAGTGGGACTTTGAGGAGTTGATGAAAGATGTTTCCTCCTTTCCGTTTCTTGATTTTTCATTCTGA 900 0.4111 MRKPEQSSKNNNNKLRKGLWSPEEDDKLMNYMLNNGQGCWSDVARNAGLLRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNLSTTTTTSTSPNASESTSELNKDINMGGFISTQYQHVGFMPMFNSSPSPSMQTTVFNSMIERFPMLEHGTNMPSAGGYFNGTTGACFSQSGGDNKGSYIENGVFGSVNIGVEVDLFVPPLENSTCKKETNNTYFDDNNRAENRVGVENLFEEELTMGEWDFEELMKDVSSFPFLDFSF 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3788g00059 299 CDD SANT 72 112 IPR001005 -
Gabi3788g00059 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
Gabi3788g00059 299 FunFam Transcription factor MYB46 71 144 - -
Gabi3788g00059 299 Gene3D - 14 70 - -
Gabi3788g00059 299 FunFam MYB transcription factor 14 70 - -
Gabi3788g00059 299 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Gabi3788g00059 299 Gene3D - 71 145 - -
Gabi3788g00059 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 64 IPR017930 -
Gabi3788g00059 299 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Gabi3788g00059 299 CDD SANT 20 64 IPR001005 -
Gabi3788g00059 299 PANTHER MYB DOMAIN PROTEIN 55 8 227 - -
Gabi3788g00059 299 SMART sant 69 117 IPR001005 -
Gabi3788g00059 299 SMART sant 16 66 IPR001005 -
Gabi3788g00059 299 Pfam Myb-like DNA-binding domain 70 113 IPR001005 -
Gabi3788g00059 299 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Gabi3788g00059 299 SUPERFAMILY Homeodomain-like 15 111 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3788g00059 Gabi-Chr3788 532173 534311 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3788g00059 3 297 MYB Transcription Factor Family AT3G08500 47.432 3.82e-82 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi3788g00059 Myb_DNA-binding 6.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3788g00059 K09422 - gmx:100786151 429.483