Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3788g00030 ATGAGAGAACAAAGATTTGAAGATAAGGTGATTAACATGCATGGATTAACTCTTCCTCTTACTATAAACAATTTACTTTGTTGTGCTCCCACTTTAAGATATTCTTCCATACCCACTTTTCAAATTTGGTATGGAAGTGGTTTCAATCCTCTTATGGTCGATTCACGCTGCTACATGAAGCATGAGACCAAAGGAAGAAGAGGTAGCAAAAGAAACAACGTTGTCAGAGCAAGCCTTGGCGAGTCTCCGTATGATGTCTTGGGCGTGTCTCCATCCGCAACTGTTGATGAAATCAAGAAGGCATATCGGAAACTTGCTCTCAAGTATCATCCCGATGTCAATAAACAGGATAAGGCGCAGGAGAAATTTATGAGAATAAAACACGCATACAATACATTGCTAAATTCTAGTTCCCGCAAAAAATATGATTCTGGAAATCGTGGTTCTGATTTTTATCAAAGAAGCCAAAATAGGAATTCGCAAGCTGAAGAAGAATTTTATGGATTAGAGGACTTCTTTAAGGATCTTCAAGAAGAATTCAGGAATTGGGAAGCCAATGCTGCTTCACAAGGAAAGCCAAAGAGTCTATGGGAGGAATTGGCGGAAATAGGAGAAGAATTTGTGGAGTTCCTTGAGAAAGAACTCAATATTGTTGATGCAAATGACAATTATAAAACGCCTCAGGAAGGAAACCCATCTAAAGTATCTGGGACAGAGACACCAAGCAACAGCGCTCAAGGTAAAGCTAGCAAGGGAAACGGAAACATTGAGGATAACCTTGATGAAATAGAAGCCACTTTGGCTCAGTTGAAAAGGGAATTAGGCTTATAG 831 0.3959 MREQRFEDKVINMHGLTLPLTINNLLCCAPTLRYSSIPTFQIWYGSGFNPLMVDSRCYMKHETKGRRGSKRNNVVRASLGESPYDVLGVSPSATVDEIKKAYRKLALKYHPDVNKQDKAQEKFMRIKHAYNTLLNSSSRKKYDSGNRGSDFYQRSQNRNSQAEEEFYGLEDFFKDLQEEFRNWEANAASQGKPKSLWEELAEIGEEFVEFLEKELNIVDANDNYKTPQEGNPSKVSGTETPSNSAQGKASKGNGNIEDNLDEIEATLAQLKRELGL 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3788g00030 276 SUPERFAMILY Chaperone J-domain 65 142 IPR036869 -
Gabi3788g00030 276 FunFam Chaperone DnaJ-domain superfamily protein 79 189 - -
Gabi3788g00030 276 CDD DnaJ 83 135 IPR001623 -
Gabi3788g00030 276 MobiDBLite consensus disorder prediction 137 160 - -
Gabi3788g00030 276 Gene3D DnaJ domain 80 189 IPR036869 -
Gabi3788g00030 276 PRINTS DnaJ domain signature 118 138 IPR001623 -
Gabi3788g00030 276 PRINTS DnaJ domain signature 102 117 IPR001623 -
Gabi3788g00030 276 PRINTS DnaJ domain signature 84 102 IPR001623 -
Gabi3788g00030 276 MobiDBLite consensus disorder prediction 221 260 - -
Gabi3788g00030 276 SMART dnaj_3 81 138 IPR001623 -
Gabi3788g00030 276 Coils Coil 253 273 - -
Gabi3788g00030 276 ProSiteProfiles dnaJ domain profile. 82 146 IPR001623 -
Gabi3788g00030 276 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 63 215 - -
Gabi3788g00030 276 MobiDBLite consensus disorder prediction 221 253 - -
Gabi3788g00030 276 Pfam DnaJ domain 83 143 IPR001623 -
Gabi3788g00030 276 ProSitePatterns Nt-dnaJ domain signature. 123 142 IPR018253 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3788g00030 Gabi-Chr3788 303944 308514 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3788g00030 84 144 C2H2 Transcription Factor Family AT1G74250 38.806 3.01e-07 49.3