Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3788g00029 ATGAGAGAACAAAGATTTGAAGATAAGGTGATTAACATGCATGGATTAACTCTTCCTCTTACTATAAACAATTTACTTTGTTGTGCTCCCACTTTAAGATATTCTTCCATACCCACTTTTCAAATTTGGTATGGAAGTGGTTTCAATCCTCTTATGGTCGATTCACGCTGCTACATGAAGCATGAGACCAAAGGAAGAAGAGGTAGCAAAAGAAACAACGTTGTCAGAGCAAGCCTTGGCGAGTCTCCGTATGATGTCTTGGGCGTGTCTCCATCCGCAACTGTTGATGAAATCAAGAAGGCATATCGGAAACTTGCTCTCAAGTATCATCCCGATGTCAATAAACAGGATAAGGCGCAGGAGAAATTTATGAGAATAAAACACGCATACAATACATTGCTAAATTCTAGTTCCCGCAAAAAATATGATTCTGGAAATCGTGGTTCTGATTTTTATCAAAGAAGCCAAAATAGGAATTCGCAAGCTGAAGAAGAATTTTATGGATTAGGTAATTTTATGAGGGATGTTCAAATAACAATAGAGGACTTCTTTAAGGATCTTCAAGAAGAATTCAGGAATTGGGAAGCCAATGCTGCTTCACAAGGAAAGCCAAAGAGTCTATGGGAGGAATTGGCGGAAATAGGAGAAGAATTTGTGGAGTTCCTTGAGAAAGAACTCAATATTGTTGATGCAAATGACAATTATAAAACGCCTCAGGAAGGAAACCCATCTAAAGTATCTGGGACAGAGACACCAAGCAACAGCGCTCAAGGTAAAGCTAGCAAGGGAAACGGAAACATTGAGGATAACCTTGATGAAATAGAAGCCACTTTGGCTCAGTTGAAAAGGGAATTAGGCTTATAG 864 0.3912 MREQRFEDKVINMHGLTLPLTINNLLCCAPTLRYSSIPTFQIWYGSGFNPLMVDSRCYMKHETKGRRGSKRNNVVRASLGESPYDVLGVSPSATVDEIKKAYRKLALKYHPDVNKQDKAQEKFMRIKHAYNTLLNSSSRKKYDSGNRGSDFYQRSQNRNSQAEEEFYGLGNFMRDVQITIEDFFKDLQEEFRNWEANAASQGKPKSLWEELAEIGEEFVEFLEKELNIVDANDNYKTPQEGNPSKVSGTETPSNSAQGKASKGNGNIEDNLDEIEATLAQLKRELGL 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3788g00029 287 MobiDBLite consensus disorder prediction 232 264 - -
Gabi3788g00029 287 CDD DnaJ 83 135 IPR001623 -
Gabi3788g00029 287 MobiDBLite consensus disorder prediction 137 160 - -
Gabi3788g00029 287 Coils Coil 264 284 - -
Gabi3788g00029 287 Pfam DnaJ domain 83 143 IPR001623 -
Gabi3788g00029 287 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 63 226 - -
Gabi3788g00029 287 PRINTS DnaJ domain signature 102 117 IPR001623 -
Gabi3788g00029 287 PRINTS DnaJ domain signature 84 102 IPR001623 -
Gabi3788g00029 287 PRINTS DnaJ domain signature 118 138 IPR001623 -
Gabi3788g00029 287 SMART dnaj_3 81 138 IPR001623 -
Gabi3788g00029 287 Gene3D DnaJ domain 80 199 IPR036869 -
Gabi3788g00029 287 ProSiteProfiles dnaJ domain profile. 82 146 IPR001623 -
Gabi3788g00029 287 MobiDBLite consensus disorder prediction 232 271 - -
Gabi3788g00029 287 SUPERFAMILY Chaperone J-domain 65 142 IPR036869 -
Gabi3788g00029 287 ProSitePatterns Nt-dnaJ domain signature. 123 142 IPR018253 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3788g00029 Gabi-Chr3788 303942 308514 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3788g00029 84 144 C2H2 Transcription Factor Family AT1G74250 38.806 2.82e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3788g00029 - - gmx:100812972 392.889