Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3788g00022 ATGAACTCGGACATTCAACCTGCTGCGGCGTCGTATTGGTGTTATAGTTGTAATCGCTTCGTTCACCTCTTGGACCGCGACGACGTCGTTTGCCCTCACTGCCGAAGTGGCTTCGTCGAAGAGATCCACGCAGGCCAATCGCCGGCGGTTTCTCTCTTCGCCGATGGTTTTCACGCTTCTTCGAGGAGACAAGGGTTCCGCCGAAGACGCCGCAACGCGGGTAGCCGCTCGCCGTTTAATCCAGTAATTGTTCTCCGCGGTCACGGCGAGGACGGTGGCGTCGGTGATAACGATGGGAGTAGCTTTGAATTGTACTATGACGACGGTGAAGGCACGGGCCTCCGACCGGTGCCGCCTACCATGTCGGAGTTCTTGCTTGGATCAGGCTTCGACCGGTTGCTGGAGCAGTTTTCTCAGATCGAGATTAACGGATTTGGCCTGTCGGAGAATCCGCCGGCGTCGAAGGCGGCGATAGAGTCAATGCCGACGGTTGAGATCGCGGAGGCGGAGGTGGAGACGGAGACGCACTGTGCCGTGTGCAAAGAAGCGTTCGAGTTAGGTTCGAAGGCGCGTGAGATGCCCTGCAAGCACCTTTACCATTCGGATTGCATTCTCCCATGGCTCTCGATGCGGAACTCGTGTCCAGTGTGCCGGCACGAATTGCCGTCGGATCAGAACCCACCGGAAAACAGGATAACCGGTCAGATCGATGAAGAAGCGGTAGGGTTGACCATATGGAGATTACCGGGAGGTGGATTCGCCGTCGGGAGATTCTCCGGCGGTCGGAGAACCGGCGAGAGTCACTTGCCGGTTGTGTACACGGAGATGGACGGTGGTAGCAATTCAAATGGAGGTTCGACAAGAATCTCTCTGGCAGTTGGAAGCAACAGAGTGAGGGAGAGTCGTGGAATTGGAAGAATTTTTCGCAATTTCTTTTCCTTCTTTGGGAGAGTTGGATCCCTGAATAGAAGCCGTAGCTTTTCTACTTCGTTATTCAATAGAAGCTCACGGAGAAGAAGCAGAACTTGGATCTTGGAAGATTGA 1044 0.5469 MNSDIQPAAASYWCYSCNRFVHLLDRDDVVCPHCRSGFVEEIHAGQSPAVSLFADGFHASSRRQGFRRRRRNAGSRSPFNPVIVLRGHGEDGGVGDNDGSSFELYYDDGEGTGLRPVPPTMSEFLLGSGFDRLLEQFSQIEINGFGLSENPPASKAAIESMPTVEIAEAEVETETHCAVCKEAFELGSKAREMPCKHLYHSDCILPWLSMRNSCPVCRHELPSDQNPPENRITGQIDEEAVGLTIWRLPGGGFAVGRFSGGRRTGESHLPVVYTEMDGGSNSNGGSTRISLAVGSNRVRESRGIGRIFRNFFSFFGRVGSLNRSRSFSTSLFNRSSRRRSRTWILED 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3788g00022 347 FunFam E3 ubiquitin-protein ligase RING1-like 139 224 - -
Gabi3788g00022 347 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 59 222 - -
Gabi3788g00022 347 Pfam Protein of unknown function (DUF1117) 241 340 IPR010543 -
Gabi3788g00022 347 CDD RING-H2_RNF126-like 177 218 - -
Gabi3788g00022 347 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 145 224 IPR013083 -
Gabi3788g00022 347 SMART ring_2 177 217 IPR001841 -
Gabi3788g00022 347 ProSiteProfiles Zinc finger RING-type profile. 177 218 IPR001841 -
Gabi3788g00022 347 SUPERFAMILY RING/U-box 157 226 - -
Gabi3788g00022 347 Pfam zinc-ribbon 11 42 IPR039525 GO:0061630
Gabi3788g00022 347 Pfam Ring finger domain 176 218 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3788g00022 Gabi-Chr3788 261332 262834 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3788g00022 110 229 C3H Transcription Factor Family AT5G01980 43.333 3.67e-27 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3788g00022 K11982 - gmx:100792874 473.011