Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3788g00021 ATGAGTTTCGTTTTCCGAGGGAGTAGGGGAGATATTGAAAGGGGATTTTCAGAATATGCTCCTGAAAGAAACCCAATGCGTATTCATCCTGCTAGGCCAGTTAATAGCAATTCTCTGGCTTTTCTTATTACAGTTCTTGTGCTGTTCATGTTATTGAGCTCGCCTCAGATGTCACATTATTTTTTGCTCTGGCTTGTGATGGCTGTCTTTGCCATGGCGACAAGCCTGAGGATGTATGTAGCTTGTCAACATCTTCAAGCTCAGGCCAGGGCTCATGCTGCAGCAGCCACTGGGTTGCTTGGCCATACTGAATTACGACTCCATGTGCCACCATCCATAGCAATAGCAACTAGAGGACGATTGCATGGACTTAGACTTCAGCTTGCACTTCTTGATCGTGAATTTGATGAGCTAGACTATGACACTTTGAGAGCTCTGGACTCTGATACTGCTTCTAGTACTCCTTCAATGTCTGAGGAAGAGATAAATGCCTTGCCTGTTCACACGTATAAAGTAGCAGTTCCAACAAAGGATGGCTCAGCAGGGTTGGCATCCTCTTCAGGTGCAGATGAGATTAAACAAGACTCTGAAGGAGCAGAGGGAAGTATCCAAGGTCCAGAAGATGGGCTGACATGTACCATATGCTTGGACCAAGTTAACAAGGGGGAACTTGTTCGTAGCTTGCCATGTTTACATCAGTTTCATGCCAACTGCATCGATCCATGGCTCCGGCAACAAGGAACATGTCCTGTTTGTAAATTTAGGATGGGGTCGGGATGGCAGGGAAACGGGGAGAGCGAATCTGATGGTTCAGAAATTGTGTAG 825 0.4618 MSFVFRGSRGDIERGFSEYAPERNPMRIHPARPVNSNSLAFLITVLVLFMLLSSPQMSHYFLLWLVMAVFAMATSLRMYVACQHLQAQARAHAAAATGLLGHTELRLHVPPSIAIATRGRLHGLRLQLALLDREFDELDYDTLRALDSDTASSTPSMSEEEINALPVHTYKVAVPTKDGSAGLASSSGADEIKQDSEGAEGSIQGPEDGLTCTICLDQVNKGELVRSLPCLHQFHANCIDPWLRQQGTCPVCKFRMGSGWQGNGESESDGSEIV 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3788g00021 274 MobiDBLite consensus disorder prediction 180 205 - -
Gabi3788g00021 274 CDD RING-H2_PA-TM-RING 211 253 - -
Gabi3788g00021 274 PANTHER TARGET OF ERK KINASE MPK-1 1 260 - -
Gabi3788g00021 274 ProSiteProfiles Zinc finger RING-type profile. 212 253 IPR001841 -
Gabi3788g00021 274 SUPERFAMILY RING/U-box 208 257 - -
Gabi3788g00021 274 SMART ring_2 212 252 IPR001841 -
Gabi3788g00021 274 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 258 IPR013083 -
Gabi3788g00021 274 Pfam Ring finger domain 211 253 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3788g00021 Gabi-Chr3788 246142 252240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3788g00021 1 274 C3H Transcription Factor Family AT3G55530 69.928 1.67e-126 359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3788g00021 K16283 - gmx:100805406 405.601