Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3788g00011 ATGGACTTAAGGGATTCATTTCCTATCTTCTTTCTGTTTTGCAGCTTCTGGGGTGTGTCTTTCTGTGGACAAGATGGTTTCTTGAGTCTATCTTGTGGTGGAAAAACCAGCTTCAGTGATTCATCTAACATTTCATGGGTGCCAGACACTACCTACATAACCACAGGCAAGACAATTACCATCAATTACAATGATGGTTCTTCCTCCATAAATGTCTCAGCTCGGTTCTTCCCGAATTCCAGAGGCCGCACATGCTATAGGATACCAGTGAACAATGCAACTACTTTGGTTCTCCTGAGAGCAAAGTTTGTGTACAAGAACTATGATGGACTTGGAAAACCACCTACTTTTTCTGTTTCTCTTGGGACAGCTATTGCTGCTAACATAAATCTTGCTAAAAATGATCCATGCACAGAAGAGTTTCTCTGGACAGTCAATAAGGACACACTACCATTCTGTTTAAATTCAATTCCAAGTGGTGGTTCTCCTGTGATTTCTTCACTTGAAATCAGACCACTGCCTAAAGGATCCTACACAAATGGCAAAGAAGATTTCCCAAATAAACTACTCAAGAAGAGTTATCGAATTGATTGTGGCCACACCAATGAGTCTATTCAGTACCCCATGGATCCCTATGATAGAATATGGAATGCTGATAGAAGTTTCACACCCTTTCATGCTACAACTGGATTTAAGATTCAGAATAGCTTCAATCCATCTAATATTGTGGAGGAACCACCAGCTACTGTTCTTCAAACTGGGAGAGTCTTGGCGCGGCGAAATATGCTGGCATATAACCTCCCTCTTGATAGATTAGGGGACTACTACATCATCCTGTATTTTGCTGGAATTCTTCCCGTGTTCCCCTCATTTGATGTATTGATAAATGGAGATCTTGTAAAATCAAACTATACAATAAAGAGCTCAGAAATCAGTGTTTTATACGTTACACAAAAGGGAATAAGCAGCTTGAATATAACACTAAGGAGTATCAGCTTCTACCCTCAGATCAATGCATTTGAGGTATATAATATGGTTGATATTCCATCTGAAGCCTCCTCAACCACAGTTTCAGCAATGCAAGTTATTCAGCAGTCCACTGGCTTGGATCTAGGATGGCAAGATGATCCATGCTCCCCTTTCCCATGGGATCATATTGATTGTGAAGGAAACCTGGTTACATCATTGGATCTTTCAGGCATAAATTTGAGATCAATTAGTCCTACATTTGGTGACTTGTTGGACCTTAAAACATTGGATTTGCGCAACACATCTCTTGCTGGAGAAATTCAGAATTTGGATAGCTTGCAGCATCTTGAAATACTGAACCTTGGTTTCAATAATCTAACATCCTTTGGTGTAGAGCTGGAAAACTTGATTAGCCTTCAAATACTAGACTTGCAAAACAACAGTCTACAGGGAACAGTTCCTGATAGCTTGGGAGAGATAGAGGATCTCCACTTACTGAATCTGGAAAACAACAAACTACAAGGTCCACTTCCACTGTCCTTGAACAAAGAAAGTTTAGAGATCAGAACATCAGGGAATTTGTGCCTTACTTTTTCCACAACCACATGTGGTGATGCATCATCCAATCCTTCAATTGAGACACCACAAGTGACTATAATTCCCAAAAAGAAGCACAAAGTACAAAATCATCTAGCAATCATACTAGGCATGGTTGGAGGAGCTACACTTGCCCTTATCTTGATATGTGTTTCAGTATTTATATACATGACTAAAAAGAGATATGAAGTCTCGTACACAGCAAGGGTAGAAACGGATATGAGGAATTGGGGTGCAGTAAAAGTCTTTTCCTACAAAGAAATCAAAGTAGCTACAAGCAACTTTAAAGAAGTCATAGGACGGGGAAGTTTTGGATCAGTTTACCTTGGAAAGCTTCCAGATGGAAAATCAGTTGCTGTCAAAGTTCGGTTTGATAAATCCCAGCTAGGGGTTGATTCTTTTTTCAATGAGATTCATCTCCTGTCGAAAATCCGACATCAAAATCTTGTGTCTTTGGAAGGATTTTGTCAAGAATCAAAGCATCAGATATTAGTTTATGAGTACTTGCCTGGTGGATCACTGGGTGATCACCTCTATGGTGCAAACAGCTACAAAACTCCCTTAAGCTGGATTCGAAGGTTGAAAATTGCAGTCGATGCAGCAAAAGGACTGGATTATTTGCATAACGGAAATGAACCACGAATCATACACCGAGATGTCAAGTGTAGTAATATTCTATTGGATATGGATATGAATGCTAAGGTCTGCGACTTTGGCCTCTCTAAGCAAGTAACCCAAGCAGATGCAACTCATGTCACAACTGTTGTGAAGGGAACTGCTGGGTATCTAGATCCAGAGTATTATTCCACCCAACAGCTTACAGAGAAAAGTGATGTATATAGCTTTGGAGTTGTTCTTTTGGAACTCATTTGTGGAAGAGAGACAATGATTCATTCTGGAACTCCTGACTCATTCAATTTGGTGTTATGGAGCCCCTGGTTGCGGCTGGGGTTTGCTTTTGATATTGACTCGAGGGATCAAAGATCCCTGAGTTAA 2562 0.4024 MDLRDSFPIFFLFCSFWGVSFCGQDGFLSLSCGGKTSFSDSSNISWVPDTTYITTGKTITINYNDGSSSINVSARFFPNSRGRTCYRIPVNNATTLVLLRAKFVYKNYDGLGKPPTFSVSLGTAIAANINLAKNDPCTEEFLWTVNKDTLPFCLNSIPSGGSPVISSLEIRPLPKGSYTNGKEDFPNKLLKKSYRIDCGHTNESIQYPMDPYDRIWNADRSFTPFHATTGFKIQNSFNPSNIVEEPPATVLQTGRVLARRNMLAYNLPLDRLGDYYIILYFAGILPVFPSFDVLINGDLVKSNYTIKSSEISVLYVTQKGISSLNITLRSISFYPQINAFEVYNMVDIPSEASSTTVSAMQVIQQSTGLDLGWQDDPCSPFPWDHIDCEGNLVTSLDLSGINLRSISPTFGDLLDLKTLDLRNTSLAGEIQNLDSLQHLEILNLGFNNLTSFGVELENLISLQILDLQNNSLQGTVPDSLGEIEDLHLLNLENNKLQGPLPLSLNKESLEIRTSGNLCLTFSTTTCGDASSNPSIETPQVTIIPKKKHKVQNHLAIILGMVGGATLALILICVSVFIYMTKKRYEVSYTARVETDMRNWGAVKVFSYKEIKVATSNFKEVIGRGSFGSVYLGKLPDGKSVAVKVRFDKSQLGVDSFFNEIHLLSKIRHQNLVSLEGFCQESKHQILVYEYLPGGSLGDHLYGANSYKTPLSWIRRLKIAVDAAKGLDYLHNGNEPRIIHRDVKCSNILLDMDMNAKVCDFGLSKQVTQADATHVTTVVKGTAGYLDPEYYSTQQLTEKSDVYSFGVVLLELICGRETMIHSGTPDSFNLVLWSPWLRLGFAFDIDSRDQRSLS 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3788g00011 853 FunFam Os07g0541700 protein 691 781 - -
Gabi3788g00011 853 ProSiteProfiles Protein kinase domain profile. 615 853 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3788g00011 853 FunFam serine/threonine-protein kinase PBS1-like 584 690 - -
Gabi3788g00011 853 Gene3D Transferase(Phosphotransferase) domain 1 691 839 - -
Gabi3788g00011 853 Gene3D Ribonuclease Inhibitor 354 528 IPR032675 -
Gabi3788g00011 853 Pfam Malectin-like domain 30 344 IPR024788 -
Gabi3788g00011 853 ProSitePatterns Serine/Threonine protein kinases active-site signature. 737 749 IPR008271 GO:0004672|GO:0006468
Gabi3788g00011 853 SUPERFAMILY Protein kinase-like (PK-like) 587 831 IPR011009 -
Gabi3788g00011 853 Gene3D Phosphorylase Kinase; domain 1 588 690 - -
Gabi3788g00011 853 SMART serkin_6 615 852 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3788g00011 853 ProSitePatterns Protein kinases ATP-binding region signature. 621 643 IPR017441 GO:0005524
Gabi3788g00011 853 Gene3D - 191 347 - -
Gabi3788g00011 853 SUPERFAMILY L domain-like 359 506 - -
Gabi3788g00011 853 Pfam Protein tyrosine and serine/threonine kinase 617 816 IPR001245 GO:0004672|GO:0006468
Gabi3788g00011 853 PANTHER OS07G0107800 PROTEIN-RELATED 455 835 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3788g00011 Gabi-Chr3788 126378 135788 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3788g00011 10 844 Receptor kinase-like Gene Family AT5G48740 62.919 0.0 1018
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Gabi3788g00011 Malectin_like 2.5e-53 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3788g00011 - - aprc:113850446 1421.37