Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3788g00008 ATGTCTCTTCCAAGATCCACAGAGGGTAAACCAAACAACACCACTCTTCAGCAGCTGATGAAGGAAGCACCCTCTTCCTCTTCTTCTTCATGGAATAGGCTCACCAACAACAGAAACTCTTTCCCTCCTATACCTCCACACAAGAGAAGCAAAGTGGAAGATAGCGATGAAGATCTGTTCACGGTGCCAGATGTGGAAGCTACACAAAGTGTCCATTCTGCAGCAACAAATCAAAATAGTAACCTTAACCAAAGCAATGTGACGGATCCTTCGCTTCAAACTGGCTTCCCCGGCGGTAAGCGCCGCCGCGGAAGAAACCCTGTAGACAAAGAGTATAGACGCCTCAAGAGGTTGTTGAGAAATAGGGTTTCTGCGCAACAGGCCCGTGAAAGAAAAAAAGTGTATATGAATGACTTGGAATCAAGAGCTAAAGAGATGGAAGACAAGAATTCCAAGTTGGAAGAGCGTATCTCGACTTTGATCAATGAGAACACCATGCTCCGTAAGGTTCTTATGAGCACAAGGGCCAAAGTTGATGAGAGCATTGAACCATAG 555 0.4559 MSLPRSTEGKPNNTTLQQLMKEAPSSSSSSWNRLTNNRNSFPPIPPHKRSKVEDSDEDLFTVPDVEATQSVHSAATNQNSNLNQSNVTDPSLQTGFPGGKRRRGRNPVDKEYRRLKRLLRNRVSAQQARERKKVYMNDLESRAKEMEDKNSKLEERISTLINENTMLRKVLMSTRAKVDESIEP 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3788g00008 184 MobiDBLite consensus disorder prediction 1 59 - -
Gabi3788g00008 184 SUPERFAMILY Leucine zipper domain 112 171 IPR046347 GO:0003700|GO:0006355
Gabi3788g00008 184 MobiDBLite consensus disorder prediction 75 109 - -
Gabi3788g00008 184 FunFam Transcription factor HY5 132 173 - -
Gabi3788g00008 184 Coils Coil 129 170 - -
Gabi3788g00008 184 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 21 180 IPR044280 GO:0000981|GO:0045944
Gabi3788g00008 184 SMART brlzneu 109 173 IPR004827 GO:0003700|GO:0006355
Gabi3788g00008 184 MobiDBLite consensus disorder prediction 1 43 - -
Gabi3788g00008 184 Pfam bZIP transcription factor 110 169 IPR004827 GO:0003700|GO:0006355
Gabi3788g00008 184 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 111 174 IPR004827 GO:0003700|GO:0006355
Gabi3788g00008 184 Gene3D Single helix bin 132 173 - -
Gabi3788g00008 184 MobiDBLite consensus disorder prediction 75 93 - -
Gabi3788g00008 184 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 116 131 IPR004827 GO:0003700|GO:0006355
Gabi3788g00008 184 CDD bZIP_HY5-like 123 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3788g00008 Gabi-Chr3788 87833 92908 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3788g00008 87 180 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT3G17609 70.103 3.75e-41 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gabi3788g00008 bZIP_1 5.1e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3788g00008 K16241 - gmx:100783826 238.81