Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3788g00001 ATGGTACCCATGTTTGAAAGGAGAAAGTCCACAAAGATTCTCCTCTTAATTCTTTGTGTCCTTCTAACACTCTGGTTACCCCAAGTTGCTTCTTTAGCCACCACTGCTACTGTTTATGCTGAAGACAGTGAAGCAAACGCTCTGTTGAAGTGGAAAGATAGCCTTGACAACCACAGCCAAACACTCTTGTCAACTTGGACAGCTTCTACTACTCCATGCAAATGGGAAGGAATTCAGTGTGACAAATCCAAGTCAGTCTCCATCATAAATCTTGCAAATTATGGACTTGAAGGTACACTCCAAACTCTCAGCTTCTCCTCATTCCCCAACCTCCTCAACTTAAATATCTACAATAACTTCTTTTATGGAACCATCCCCCCACAAATTGGTAACATGTCCAAATTAAATGTTTTGAGCTTTTCTACAAATTCTTTCCATGGTTCCATCCCTAAAGAAATATGGACATTGAGGAGTTTGCGTAGGCTTGATCTTTCCATATGCCAACTAAGTGGACCAATTCCTAATTCCATTGCAAACTTGTCCAACCTATTATTTCTAGATTTAGGAAGCAACAAAATTTCTGGCTCCATTCCTCTAGAGATTGGAAAATTGAACAACTTAGAGTATCTAGATATTTCAAATAATAGCCTTTTTGGTTCCATTCCACGTGAAATTGGAATGTTGTCAAACCTTAGGCTTATTGATTTGTCATTGAACTCTCTCTCTGGTAATATCCCTGAAACAATTGGTAACATGAGCAGTTTAACTAGACTCTTCCTTGCTAATAACACTATGTTGTCTGGGCCAATTCCACCCTCCTTATGGAACATGTCTAACTTGACCATTCTCCAACTTTATAACAATAGTCTTTCTGGAACAATCCCTGATTCCATTGAAAACTTGGCCAATTTGGATGAACTTGGACTTCATGACAACCATCTTTCTGGATCCATTCCTTACACCATTGGAAACTTGACAAAGCTCACCTCATTATACTTGGGCTTTAATGATCTTTCTGGATCAATTCCTCCATCGATAGGGAATCTTATCAATTTGAATGCCCTCAGTCTCCAAGGAAACAGTCTCTCTGGATCTATTCCTGCAACAATTGGAAATTTGGTAAGGCTCACCATCCTGGAATTGTCCTTCAACAAACTTAGTGGTAGCATTCCAGAGGTCATGAATAACATTACCAACTGGTATTTCTTGTTAATATCTGATAATGATTTCACTGGCCGCTTGCCACCTCAAATATGCTCTGGTGGGTCATTGGTGTTACTATGTGCTCAATTCAATCGTTTTTCGGGTCCAGTACCTAGAAGTTTGAAGAATTGCTCCAGTATTCATAGACTCAGGCTTGAGGGAAACCAAATGGAAGGAGATATAGAGCAAGATTTTGGTGTATATCCAAATTTGACATATATTGATCTGAGGGACAATAAATTTTATGGCCATATTTCGCCAAACTGGGGGAAGTGCCCTAAACTTGATAGCTTCATGATATCCAACAACAACATTTCTGGTGGTATCCCTGTACAACTTGTTGAGGCAACCAACCTTGGCAGGCTTCATCTTTCATCTAATCACTTGATGGGAGAGATTCCAAAGGAACTTGGGAATTTGGAAAAATTAGAGGAATTGGAGATCAGCAACAATCATTTTTCAGGAAACATTCCCACAGAACTAGGATTACTAAAGATTCTTCAACGGTTGGATCTATCAGGAAACCAATTGAGTGGCACAATACCAAAGGAAGTTGTGAGTTTTCCCAAATTACTGGAATTGAATTTGAGCAACAACAAAATAAATGGAAGCATTCCCTCTGAGTTGGGCCAATTACAATCTCTTCAATCTCTTGATCTTAGCTGGAATTTGCTGAGTGGAACAATACCAACAATGCTTGGAGATTTGAAGCAATTGAACTGGTTGAATCTTTCACACAATAATCTTTCTGGCACCATTCCTTCAAGTTTTGACCAAATGTCAGGCTTAATTTCTGTCAACATAGCATACAACCAGTTAGAAGGACCGCTTCCAAAAAATCAAGCCTTTCTTAATGCTCCAATTGAATCATTGAAAAATAACAAAGGCTTGTGTGGTAACATCACAGGATTGGTTCTTTGTCCAACCAACAATATTGGAAAGAGCAACAAAGTCATCCTAATAGTATTCCCTATTTTGGGAACTCTAGTGTTTTGTGTGGTAGGGCTTTTGATGTATATTCTTTGTCGAAGTAAGAGAAAGAAAGAAAGCAACTTTAAAGAAGCACAAAGGGAAGTAGTCTTTTCCACAAGGACTTCTGATGGGAAAATCATGTTTGAAAATATCATTGAAGCTACAGAGAATTTTCATGAAAAATATCTAATTGGAGTGGGAAGTCAAGGATATGTTTACAAGGCTGTGTTGCCCGCAGGTCTTGTTGTTGCTGTGAAAAAACTCCATTCAGTAACAGATGAGGATATGTCTGATTACAGTTCAAAGGCTTTTACTAATGAGATTCAGGCCTTGACAGGAATCAAACACAGGAACATTGTCAAGCTTCATGGATTTTGCTCACATTCACGGTTCTCATTTTTGGTTTATCAGTTCTTAGAAGGGGGTAGCTTGGATCAGATACTAAACAATGACACACAAGCAATTGCATTTGATTGGGAAAAGAGGATGAATGTTGTTAAAGGTGTGGCCAATGCTTTATCCTATCTACATCATGACTGCACACCTCCTATAGTTCATCGTGACATATCAAGCAAGAATGTTCTCCTAGATCCTCAATATGAAGCTCATGTCTCTGACTTTGGTACTGCTAAGTTTCTAAAGCCTGGTTCACATAGTTGGACCACATTTGCAGGCACCTTTGGCTATGCTGCTCCAGAGCTTGCTCAAACAATGGAAGTGAATGTGAAATGTGATGCTTTTAGTTTTGGAGTACTTGCTTTGGAAATCATTATGGGAAAGCACCCGGGAGATCTCATTTCTTTATTTATGTCACCATCTACAACACCAATGGCTAATGATTTGTTATTGATTGATGTGTTAGATCAAAGACCTCCTCAACCTACGAAACTAATTGATGGTGAGGTGGTGTTGATTGCAAAGTTGGCATTTGCTTGCTTGAGTGAAAGTCCAAGTTCTCGACCAACCATGGATCAAGTATCTAAGGTTCTTGTAATAGGAAAATCACCTTTAGTGGACCAGTTTCCCATGATTAGACTAGGACAACTTCACTGA 3228 0.39 MVPMFERRKSTKILLLILCVLLTLWLPQVASLATTATVYAEDSEANALLKWKDSLDNHSQTLLSTWTASTTPCKWEGIQCDKSKSVSIINLANYGLEGTLQTLSFSSFPNLLNLNIYNNFFYGTIPPQIGNMSKLNVLSFSTNSFHGSIPKEIWTLRSLRRLDLSICQLSGPIPNSIANLSNLLFLDLGSNKISGSIPLEIGKLNNLEYLDISNNSLFGSIPREIGMLSNLRLIDLSLNSLSGNIPETIGNMSSLTRLFLANNTMLSGPIPPSLWNMSNLTILQLYNNSLSGTIPDSIENLANLDELGLHDNHLSGSIPYTIGNLTKLTSLYLGFNDLSGSIPPSIGNLINLNALSLQGNSLSGSIPATIGNLVRLTILELSFNKLSGSIPEVMNNITNWYFLLISDNDFTGRLPPQICSGGSLVLLCAQFNRFSGPVPRSLKNCSSIHRLRLEGNQMEGDIEQDFGVYPNLTYIDLRDNKFYGHISPNWGKCPKLDSFMISNNNISGGIPVQLVEATNLGRLHLSSNHLMGEIPKELGNLEKLEELEISNNHFSGNIPTELGLLKILQRLDLSGNQLSGTIPKEVVSFPKLLELNLSNNKINGSIPSELGQLQSLQSLDLSWNLLSGTIPTMLGDLKQLNWLNLSHNNLSGTIPSSFDQMSGLISVNIAYNQLEGPLPKNQAFLNAPIESLKNNKGLCGNITGLVLCPTNNIGKSNKVILIVFPILGTLVFCVVGLLMYILCRSKRKKESNFKEAQREVVFSTRTSDGKIMFENIIEATENFHEKYLIGVGSQGYVYKAVLPAGLVVAVKKLHSVTDEDMSDYSSKAFTNEIQALTGIKHRNIVKLHGFCSHSRFSFLVYQFLEGGSLDQILNNDTQAIAFDWEKRMNVVKGVANALSYLHHDCTPPIVHRDISSKNVLLDPQYEAHVSDFGTAKFLKPGSHSWTTFAGTFGYAAPELAQTMEVNVKCDAFSFGVLALEIIMGKHPGDLISLFMSPSTTPMANDLLLIDVLDQRPPQPTKLIDGEVVLIAKLAFACLSESPSSRPTMDQVSKVLVIGKSPLVDQFPMIRLGQLH 1075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3788g00001 1075 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 201 293 - -
Gabi3788g00001 1075 SMART LRR_sd22_2 613 639 - -
Gabi3788g00001 1075 SMART LRR_sd22_2 373 399 - -
Gabi3788g00001 1075 SMART LRR_sd22_2 277 303 - -
Gabi3788g00001 1075 SMART LRR_sd22_2 325 351 - -
Gabi3788g00001 1075 SMART LRR_sd22_2 565 586 - -
Gabi3788g00001 1075 SMART LRR_sd22_2 180 201 - -
Gabi3788g00001 1075 SMART LRR_sd22_2 204 230 - -
Gabi3788g00001 1075 Gene3D Phosphorylase Kinase; domain 1 743 863 - -
Gabi3788g00001 1075 PRINTS Leucine-rich repeat signature 637 650 - -
Gabi3788g00001 1075 PRINTS Leucine-rich repeat signature 568 581 - -
Gabi3788g00001 1075 ProSiteProfiles Leucine-rich repeat profile. 591 613 IPR001611 GO:0005515
Gabi3788g00001 1075 SUPERFAMILY Protein kinase-like (PK-like) 769 1055 IPR011009 -
Gabi3788g00001 1075 ProSiteProfiles Protein kinase domain profile. 783 1063 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3788g00001 1075 Gene3D Ribonuclease Inhibitor 198 289 IPR032675 -
Gabi3788g00001 1075 FunFam MDIS1-interacting receptor like kinase 2 isoform A 41 196 - -
Gabi3788g00001 1075 Gene3D Transferase(Phosphotransferase) domain 1 864 1060 - -
Gabi3788g00001 1075 SUPERFAMILY RNI-like 342 680 - -
Gabi3788g00001 1075 Pfam Leucine rich repeat 568 626 IPR001611 GO:0005515
Gabi3788g00001 1075 Pfam Leucine rich repeat 470 530 IPR001611 GO:0005515
Gabi3788g00001 1075 Pfam Leucine rich repeat 278 338 IPR001611 GO:0005515
Gabi3788g00001 1075 Pfam Protein kinase domain 783 1052 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3788g00001 1075 FunFam MDIS1-interacting receptor like kinase 2 isoform A 294 393 - -
Gabi3788g00001 1075 Gene3D Ribonuclease Inhibitor 400 708 IPR032675 -
Gabi3788g00001 1075 Pfam Leucine Rich Repeat 158 180 IPR001611 GO:0005515
Gabi3788g00001 1075 Pfam Leucine Rich Repeat 206 225 IPR001611 GO:0005515
Gabi3788g00001 1075 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 397 712 - -
Gabi3788g00001 1075 Pfam Leucine rich repeat N-terminal domain 42 81 IPR013210 -
Gabi3788g00001 1075 SMART LRR_typ_2 325 349 IPR003591 -
Gabi3788g00001 1075 SMART LRR_typ_2 373 396 IPR003591 -
Gabi3788g00001 1075 SMART LRR_typ_2 228 252 IPR003591 -
Gabi3788g00001 1075 SMART LRR_typ_2 301 324 IPR003591 -
Gabi3788g00001 1075 SMART LRR_typ_2 277 300 IPR003591 -
Gabi3788g00001 1075 SMART LRR_typ_2 637 660 IPR003591 -
Gabi3788g00001 1075 SMART LRR_typ_2 589 612 IPR003591 -
Gabi3788g00001 1075 SMART LRR_typ_2 541 565 IPR003591 -
Gabi3788g00001 1075 SMART LRR_typ_2 613 636 IPR003591 -
Gabi3788g00001 1075 SMART LRR_typ_2 180 204 IPR003591 -
Gabi3788g00001 1075 SMART serkin_6 783 1063 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3788g00001 1075 ProSitePatterns Tyrosine protein kinases specific active-site signature. 909 921 IPR008266 GO:0004672|GO:0006468
Gabi3788g00001 1075 FunFam MDIS1-interacting receptor like kinase 2 864 1061 - -
Gabi3788g00001 1075 SUPERFAMILY RNI-like 89 411 - -
Gabi3788g00001 1075 Gene3D Ribonuclease Inhibitor 40 197 IPR032675 -
Gabi3788g00001 1075 Gene3D Ribonuclease Inhibitor 290 399 IPR032675 -
Gabi3788g00001 1075 FunFam Leucine-rich repeat receptor protein kinase MSP1 745 863 - -
Gabi3788g00001 1075 PANTHER LEUCINE RICH REPEAT KINASE 2 321 1057 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3788g00001 Gabi-Chr3788 14875 18562 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3788g00001 5 957 Receptor kinase-like Gene Family AT4G08850 44.778 0.0 751
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gabi3788g00001 Pkinase 3.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3788g00001 - - gmx:100815688 1436.4