Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3786g00071 ATGGCTGACACAGTTGCTGAAGTACCTACAAAGAGGTCGAGGGGGGGCAGAAGGGGGGCCCTGAAGGAGAAAAACCCATCAACAAACGAGGCTAACATCTTAGCTGGGAAGGTTTCTGAGTCCTCTGCAACACCAACTTCGCTCCCATCTGATAATGATACCCTTTCTCAGCCAAAGAAGGGGCGTGCCGCCTCAAAGAAACAGCAATCTTTCGAGAAAGAGTTGCTTGAGATGCAGGAAAAGATGCAGCAGTTGCGCCTAGAGAGGGAGAAGACTGAAGAACTCTTGAAGGCCAAAGACGAGGTTTTGAAGCAGAGGGAGCAAGAGCTCGAAAGTCGTGGCCGGGAGCAGGAGAAGCTTCAGACGGAGTTGAAAAAATTGCAGAAGTTGAAGGAGTTCAAACCCACCATGATTTTGCCTGTGCTGAAAGACAAGGAACAAGAAAAGAAGGACAAGAAGAAGAACGGTTGCTCTGTGAAAAAAAGGCCCTCTCCACCTTACATTTTATGGTGCAAAGATCAATGGAACGAGATTAAGAAAGCAAACCCAGAGGCAGAATTTAAGGACATTTCAAACATGTTGGGGGCTAAATGGAAGACAGTTTCTGCAGAAGAGAAGAAGCCTTATGAGGAGAAATACCATGCTGAAAAAGAAGCTTATTTGCAGGTAATTGCAAAAGAAAAACGTGAGAGTGAGGCTATGAAGCTCTTGGAGGAGGAGCAGAAGCAGAAGACTGCCATGGAATTGCTTGAACAGTATATCCAGTTCAAACAAGAGACAGAAAAAAAAGAGAGCAAGAAAAACAAGAAGGAAAAGGATCCATTGAAACCAAAACACCCTATGTCAGCTTATTTCTTGTTCACTAATGATAGACGGGCAGCGCTTCTTGCAGAGAACAAGAGTGTCTTAGAGGTTTCCAAGGTCACAGGCGAAGAGTGGAAAAACATGACAGAAGAACAAAGGAGGCCCTATGAAGAGATGGCAAAGAAGAACAAGGAGAAATATATCCTAGAAATGGAGGCTTATAAACTGAAAAAAGATGAGGACGCTGCCTATCTCATGAAGGAAGAGGAGGAGCATATGAAACTTCAGAAACAGGAAGCATTGCAACTTCTGAAGAAGAAGGAGAAGACTGAAAATATTATCAAGAAAACAAAAATGAATCGTCAGAAGAAGAAACAAAACAAGGAAGATAAGAATTCTGATCCAAACAGGCCTAAGAGGCCTCCATCCTCATTCCTCGTATTCAGCAAAGAAACAAGGAAAAATTTGCAGGAAGAACGACCAGGAATCAGTACCTCCACACTGAATGCACTTGTTTCATTGAAGTGGAAGGAACTGAGTGAGGAAGATAGACAATTATGGAATGGGAAAGCATCGGAAGCTATGGATGCATACAAGAAGGAATTGGAGGAATACAACAAATCACTAGTTGGTCCCAATCAGGAGCTGATAACCGAAGAATAA 1467 0.4329 MADTVAEVPTKRSRGGRRGALKEKNPSTNEANILAGKVSESSATPTSLPSDNDTLSQPKKGRAASKKQQSFEKELLEMQEKMQQLRLEREKTEELLKAKDEVLKQREQELESRGREQEKLQTELKKLQKLKEFKPTMILPVLKDKEQEKKDKKKNGCSVKKRPSPPYILWCKDQWNEIKKANPEAEFKDISNMLGAKWKTVSAEEKKPYEEKYHAEKEAYLQVIAKEKRESEAMKLLEEEQKQKTAMELLEQYIQFKQETEKKESKKNKKEKDPLKPKHPMSAYFLFTNDRRAALLAENKSVLEVSKVTGEEWKNMTEEQRRPYEEMAKKNKEKYILEMEAYKLKKDEDAAYLMKEEEEHMKLQKQEALQLLKKKEKTENIIKKTKMNRQKKKQNKEDKNSDPNRPKRPPSSFLVFSKETRKNLQEERPGISTSTLNALVSLKWKELSEEDRQLWNGKASEAMDAYKKELEEYNKSLVGPNQELITEE 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3786g00071 488 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 277 343 IPR009071 -
Gabi3786g00071 488 Pfam HMG (high mobility group) box 161 222 IPR009071 -
Gabi3786g00071 488 Pfam HMG (high mobility group) box 406 474 IPR009071 -
Gabi3786g00071 488 Pfam HMG (high mobility group) box 277 343 IPR009071 -
Gabi3786g00071 488 SMART hmgende2 405 475 IPR009071 -
Gabi3786g00071 488 SMART hmgende2 276 344 IPR009071 -
Gabi3786g00071 488 SMART hmgende2 159 229 IPR009071 -
Gabi3786g00071 488 SUPERFAMILY HMG-box 264 346 IPR036910 -
Gabi3786g00071 488 MobiDBLite consensus disorder prediction 374 431 - -
Gabi3786g00071 488 MobiDBLite consensus disorder prediction 10 24 - -
Gabi3786g00071 488 MobiDBLite consensus disorder prediction 260 278 - -
Gabi3786g00071 488 Gene3D High mobility group box domain 386 482 IPR036910 -
Gabi3786g00071 488 Gene3D High mobility group box domain 142 242 IPR036910 -
Gabi3786g00071 488 Gene3D High mobility group box domain 260 353 IPR036910 -
Gabi3786g00071 488 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 1 478 IPR044601 GO:0003677
Gabi3786g00071 488 Coils Coil 68 130 - -
Gabi3786g00071 488 MobiDBLite consensus disorder prediction 141 163 - -
Gabi3786g00071 488 MobiDBLite consensus disorder prediction 260 281 - -
Gabi3786g00071 488 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 160 228 IPR009071 -
Gabi3786g00071 488 CDD HMG-box_AtHMGB6-like_rpt1 161 228 - -
Gabi3786g00071 488 SUPERFAMILY HMG-box 401 478 IPR036910 -
Gabi3786g00071 488 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 406 474 IPR009071 -
Gabi3786g00071 488 MobiDBLite consensus disorder prediction 25 64 - -
Gabi3786g00071 488 MobiDBLite consensus disorder prediction 1 77 - -
Gabi3786g00071 488 Coils Coil 456 476 - -
Gabi3786g00071 488 Coils Coil 354 395 - -
Gabi3786g00071 488 MobiDBLite consensus disorder prediction 374 405 - -
Gabi3786g00071 488 SUPERFAMILY HMG-box 148 223 IPR036910 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Gabi3786g00071 HMG_box 4.9e-16 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3786g00071 K09273 - gmx:100783033 632.098