Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3786g00063 ATGGAATTTCTACGCATTTTCTCTTTCATTTATCTACTGAGTTTGATTCTCTGGCAAGGAAATGCTGAACCTGTTGAAGATAAGCAGGCTTTGCTTGACTTTGTGAACAAGTTCCCTCCTTCTCGGCCTCTGAATTGGAATGAGAGTTCCTCCGTGTGTGCTACTTGGACTGGAGTTACTTGCAATGAAGATAAGTCCAGAGTAATAGCCATTCGATTACCAGGGGTTGGATTTCATGGAACCATTCCACCTGATACCATTAGCCGCCTCTCACAGCTTCAAACTTTGAGCCTCAGATCCAATGTGATAACTGGGAACTTTCCTTCTGATTTTTCCAATCTTAAAAACTTATCTTTTCTCTATCTTCAGTTCAACAACTTGTCGGGTCGTTTGCCTGATTTCTCAGCTTGGACGAATCTTACTGTTGTCAATTTATCCAATAACCATTTCAATGGCAGCATTCCTCTCTCCCTTTCCAATTTGTCTGAGCTTGCTGGTTTGAACCTTGCAAACAACTCTCTTTCTGGTGAAATCCCTGATCTCCATTTGCCCAGATTGCAGCTGCTGAATTTGTCTAACAACAATTTGCAGGGAAGTGTTCCTAAATCCCTCAAGAGGTTTCCTGAGTCAGCATTCTTTGGAAATAACATTTCTCTTGCAAGTTCTCCTGCTGTTTCCCCTGTGGAGGCACCGGTTCATGAGCCATCTTCCAAATCTAAGAAAGGTGGAAAGCTCAGTGAAACGGCATTGCTGGGAATTATTGTTGCCGGTGCTGTTCTAGGCCTGGTAGCGTTTGCTTTTTTGATGTTTGTGTGCTGCTCGAGAAGAAGGGATGAAGACGATGATGCCTTCAGAGGGAAGTTGCAGAAGGGAGAAATGTCTCCTGAAAAAGCAGTCTCAAGGAACCAGGATGCAAATAATAAACTGGTTTTCTTTGAGGGATGTAATTATGCCTTTGATTTGGAGGATTTGTTGAGGGCTTCTGCTGAGGTACTGGGAAAGGGAACGTTTGGTACTGCTTACAAGGCAATACTAGAGGATGCAACCGCGGTTGTTGTTAAGAGGTTAAAGGAGGTGGCAGTTGGAAAAAAGGATTTTGAGCAACATATGGAGATTGTAGGAAATCTTAAGCATGAGAATTTGGTTGAGCTTAAGGCATATTATTATTCCAAAGACGAGAAACTGATGGTGTATGATTACTACAGCCAAGGGAGCATCTCTTCTCTGTTGCATGGTAAAAGAGGAGAAGATAGGGTGGCTTTAGATTGGGATACTCGGCTGAGAATAGCTTTAGGAGCTGCAAGAGGCATTGCTCGTATCCATGTTGAGAATGGTGGGAAGCTTGTACATGGCAATATTAAGTCCTCAAATATCTTTCTCAATACTAAACAGTATGGTTGTGTATCTGACCTTGGCCTTGCAACCATAATGAGCTCGCTTGCCATACCCATCTCACGAGCTGCTGGTTACCGTGCACCTGAAGTTACAGACACAAGGAAAGCAGCACAACCTTCAGATGTTTACAGCTTTGGTGTGGTGTTACTAGAGCTTCTGACAGGGAAATCCCCTATCCACACAACTGGTGGTGATGAAATCATCCACCTAGTGAGGTGGGTTCATTCAGTTGTGCGTGAGGAGTGGACAGCTGAAGTGTTTGACTTGGAGCTTATGAGATTTCCAAACATAGAAGAAGAGATGGTGGAAATGTTACAGATAGCCATGTCATGCGTGGTAAGGATGCCTGATCAGAGACCTAAGATGTCTGAAGTCGTGAAGATGATAGAAAATGTGAGGCAAATTGATACAGAGACTCCTCAGCCATCATCTGAGAACCAAGCAGAACCTAAATTACCTCAACATGACAGTGACAACTCCCCTTCTACTCCCTCCCCCTTCCCAAAAGGAAGTGAATGA 1914 0.4363 MEFLRIFSFIYLLSLILWQGNAEPVEDKQALLDFVNKFPPSRPLNWNESSSVCATWTGVTCNEDKSRVIAIRLPGVGFHGTIPPDTISRLSQLQTLSLRSNVITGNFPSDFSNLKNLSFLYLQFNNLSGRLPDFSAWTNLTVVNLSNNHFNGSIPLSLSNLSELAGLNLANNSLSGEIPDLHLPRLQLLNLSNNNLQGSVPKSLKRFPESAFFGNNISLASSPAVSPVEAPVHEPSSKSKKGGKLSETALLGIIVAGAVLGLVAFAFLMFVCCSRRRDEDDDAFRGKLQKGEMSPEKAVSRNQDANNKLVFFEGCNYAFDLEDLLRASAEVLGKGTFGTAYKAILEDATAVVVKRLKEVAVGKKDFEQHMEIVGNLKHENLVELKAYYYSKDEKLMVYDYYSQGSISSLLHGKRGEDRVALDWDTRLRIALGAARGIARIHVENGGKLVHGNIKSSNIFLNTKQYGCVSDLGLATIMSSLAIPISRAAGYRAPEVTDTRKAAQPSDVYSFGVVLLELLTGKSPIHTTGGDEIIHLVRWVHSVVREEWTAEVFDLELMRFPNIEEEMVEMLQIAMSCVVRMPDQRPKMSEVVKMIENVRQIDTETPQPSSENQAEPKLPQHDSDNSPSTPSPFPKGSE 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3786g00063 637 ProSitePatterns Protein kinases ATP-binding region signature. 332 363 IPR017441 GO:0005524
Gabi3786g00063 637 Pfam Leucine rich repeat N-terminal domain 26 62 IPR013210 -
Gabi3786g00063 637 ProSiteProfiles Protein kinase domain profile. 326 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3786g00063 637 MobiDBLite consensus disorder prediction 597 637 - -
Gabi3786g00063 637 Gene3D Phosphorylase Kinase; domain 1 291 400 - -
Gabi3786g00063 637 FunFam pollen receptor-like kinase 1 295 400 - -
Gabi3786g00063 637 Pfam Protein kinase domain 329 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3786g00063 637 Pfam Leucine rich repeat 81 127 IPR001611 GO:0005515
Gabi3786g00063 637 SUPERFAMILY L domain-like 37 207 - -
Gabi3786g00063 637 FunFam Probable inactive receptor kinase RLK902 24 182 - -
Gabi3786g00063 637 MobiDBLite consensus disorder prediction 599 637 - -
Gabi3786g00063 637 Gene3D Ribonuclease Inhibitor 26 135 IPR032675 -
Gabi3786g00063 637 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 401 608 - -
Gabi3786g00063 637 PANTHER OS05G0588300 PROTEIN 6 608 - -
Gabi3786g00063 637 Gene3D Ribonuclease Inhibitor 136 224 IPR032675 -
Gabi3786g00063 637 Gene3D Transferase(Phosphotransferase) domain 1 402 618 - -
Gabi3786g00063 637 SUPERFAMILY Protein kinase-like (PK-like) 330 594 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3786g00063 Gabi-Chr3786 477236 480846 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3786g00063 1 613 Receptor kinase-like Gene Family AT4G23740 65.719 0.0 799
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Gabi3786g00063 Pkinase 8.3e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3786g00063 - - gmx:100804799 1004.97