Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3786g00047 ATGGGCAACTGCAGCAGCAGCACCAGCGTCGGCGGCGCCGCCACATACTCCGGCGAGCCTTCCCACAGCAACGGTCTCACCGTCCTCCCTCCCAACTCCAATCCCTCACCCTCTCCCCCACTCCCCAGACAACCCCTCTCCGCCGCCGTTGGCCGCGTCCTCGGCCGTCCCATGGAGGACGTTCGTTCCATCTACATCTTCGGCCGCGAACTTGGCCGTGGCCAATTCGGCGTCACCTACTTGGTGACCCACAAAGTGACGAAGGAGCAATTCGCGTGCAAATCAATCGCCACGCGCAAACTGATAAACCGCGACGACATCGAGGACATTCGGCGCGAGGTACAGATCATGCACCACCTCACCGGCCACCGCAACATTGTGGAGCTGAAGGGTGCTTACGAGGACCGCCACTCCGTGAACCTGATCATGGAGCTCTGCGGTGGTGGCGAGCTTTTCGACAGGATCATTACGAAGGGCCACTACTCGGAGCGTGCCGCCGCTAACTTGTGCCGGCAGATCGTGACGGTGGTTCATAACTGTCACACCATGGGAGTGATGCATAGGGACTTGAAGCCTGAGAATTTCTTGTTTCTCAGTAAGGACGAGAGTTCGCCTCTCAAGGCCACAGATTTTGGTCTCTCAGTGTTTTTTAAGCCAGGAGATGTATTTAAAGATCTTGTTGGGAGTGCCTATTATGTTGCTCCTGAGGTGCTGCGTAGAAGTTATGGTCCCGAAGCTGATATTTGGAGTGCTGGTGTTATCTTATACATTCTACTTTCTGGTGTCCCACCCTTCTGGGCAGGTAAAACTCCTTCCTTCGTATGCATTATATGTATCTTTGATGCTATTCTTCGTGGACATATTGATTTCACATCCGATCCTTGGCCTTCCATATCAAGTAGTGCCAAAGATCTAGTCAAGAAGATGCTACGAGCTGACCCTAAGGAACGCCTTTCAGCAGTTGAAGTACTTAATCATCCTTGGATGAGAGTAGATGGAGATGCATCTGATAAGCCGCTTGATATTGCTGTTTTGAGCAGAATGAAACAATTCCGGGCAATGAACAAGCTAAAGAAAGTAGCTCTAAAGGTTATAGCTGAAAATCTTTCTGAAGAGGAAATTATTGGCTTGAAGGAAATGTTCAAATCCATGGATACTGATAATAGTGGAACAATCACTTTTGAAGAGTTGAAAGCTGGTCTCCCCAAACTGGGTAGCAAACTTTCTGAGTCTGAAGTAAGGCAGTTGATGGAGGCGGCCGATGTAGATGGAAATGGAACCATTGATTATATTGAATTTATAACTGCTACCATGCATATGAATAGAATGGAAAGAGAGGATCACCTATATACAGCCTTTGAATATTTTGACAAGGATAAGAGCGGGTACATCACAACGGAAGAGTTGGAATTTGCCCTTAAGAAGTATAATATGGGTGATGAGAAAACAATAAAGGAGATCATTGCCGAAGTTGATACAGACAATGATGCAAAAATTAACTATGATGAGTTTGTAGCCATGATGAGGAAAGGCAACCCAGAAATAACCCACAGACGTCGCAAATAA 1566 0.4783 MGNCSSSTSVGGAATYSGEPSHSNGLTVLPPNSNPSPSPPLPRQPLSAAVGRVLGRPMEDVRSIYIFGRELGRGQFGVTYLVTHKVTKEQFACKSIATRKLINRDDIEDIRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMELCGGGELFDRIITKGHYSERAAANLCRQIVTVVHNCHTMGVMHRDLKPENFLFLSKDESSPLKATDFGLSVFFKPGDVFKDLVGSAYYVAPEVLRRSYGPEADIWSAGVILYILLSGVPPFWAGKTPSFVCIICIFDAILRGHIDFTSDPWPSISSSAKDLVKKMLRADPKERLSAVEVLNHPWMRVDGDASDKPLDIAVLSRMKQFRAMNKLKKVALKVIAENLSEEEIIGLKEMFKSMDTDNSGTITFEELKAGLPKLGSKLSESEVRQLMEAADVDGNGTIDYIEFITATMHMNRMEREDHLYTAFEYFDKDKSGYITTEELEFALKKYNMGDEKTIKEIIAEVDTDNDAKINYDEFVAMMRKGNPEITHRRRK 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3786g00047 521 ProSitePatterns EF-hand calcium-binding domain. 421 433 IPR018247 -
Gabi3786g00047 521 ProSiteProfiles EF-hand calcium-binding domain profile. 372 407 IPR002048 GO:0005509
Gabi3786g00047 521 CDD STKc_CAMK 65 328 - -
Gabi3786g00047 521 Pfam EF-hand domain pair 377 437 IPR002048 GO:0005509
Gabi3786g00047 521 Pfam EF-hand domain pair 447 509 IPR002048 GO:0005509
Gabi3786g00047 521 SMART serkin_6 65 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3786g00047 521 SMART efh_1 376 404 IPR002048 GO:0005509
Gabi3786g00047 521 SMART efh_1 483 511 IPR002048 GO:0005509
Gabi3786g00047 521 SMART efh_1 448 476 IPR002048 GO:0005509
Gabi3786g00047 521 SMART efh_1 412 440 IPR002048 GO:0005509
Gabi3786g00047 521 Gene3D Phosphorylase Kinase; domain 1 67 150 - -
Gabi3786g00047 521 FunFam Calcium-dependent protein kinase 1 337 512 - -
Gabi3786g00047 521 ProSiteProfiles EF-hand calcium-binding domain profile. 444 479 IPR002048 GO:0005509
Gabi3786g00047 521 Gene3D Transferase(Phosphotransferase) domain 1 151 336 - -
Gabi3786g00047 521 Gene3D - 337 514 - -
Gabi3786g00047 521 ProSitePatterns Protein kinases ATP-binding region signature. 71 94 IPR017441 GO:0005524
Gabi3786g00047 521 ProSiteProfiles EF-hand calcium-binding domain profile. 408 443 IPR002048 GO:0005509
Gabi3786g00047 521 MobiDBLite consensus disorder prediction 1 46 - -
Gabi3786g00047 521 MobiDBLite consensus disorder prediction 1 31 - -
Gabi3786g00047 521 ProSitePatterns Serine/Threonine protein kinases active-site signature. 185 197 IPR008271 GO:0004672|GO:0006468
Gabi3786g00047 521 FunFam Calcium-dependent protein kinase 1 67 150 - -
Gabi3786g00047 521 ProSiteProfiles Protein kinase domain profile. 65 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3786g00047 521 FunFam calcium-dependent protein kinase 1 151 336 - -
Gabi3786g00047 521 SUPERFAMILY EF-hand 368 509 IPR011992 -
Gabi3786g00047 521 PANTHER SERINE/THREONINE-PROTEIN KINASE 65 504 - -
Gabi3786g00047 521 ProSiteProfiles EF-hand calcium-binding domain profile. 480 514 IPR002048 GO:0005509
Gabi3786g00047 521 ProSitePatterns EF-hand calcium-binding domain. 385 397 IPR018247 -
Gabi3786g00047 521 SUPERFAMILY Protein kinase-like (PK-like) 65 330 IPR011009 -
Gabi3786g00047 521 ProSitePatterns EF-hand calcium-binding domain. 457 469 IPR018247 -
Gabi3786g00047 521 Pfam Protein kinase domain 67 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3786g00047 Gabi-Chr3786 363071 368131 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3786g00047 51 521 EF-hand Containing Proteins AT4G23650 80.042 0.0 806
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gabi3786g00047 Pkinase 8.3e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3786g00047 K13412 - gmx:100777096 896.345