Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3786g00046 ATGGGCAACTGCAGCAGCAGCACCAGCGTCGGCGGCGCCGCCACATACTCCGGCGAGCCTTCCCACAGCAACGGTCTCACCGTCCTCCCTCCCAACTCCAATCCCTCACCCTCTCCCCCACTCCCCAGACAACCCCTCTCCGCCGCCGTTGGCCGCGTCCTCGGCCGTCCCATGGAGGACGTTCGTTCCATCTACATCTTCGGCCGCGAACTTGGCCGTGGCCAATTCGGCGTCACCTACTTGGTGACCCACAAAGTGACGAAGGAGCAATTCGCGTGCAAATCAATCGCCACGCGCAAACTGATAAACCGCGACGACATCGAGGACATTCGGCGCGAGGTACAGATCATGCACCACCTCACCGGCCACCGCAACATTGTGGAGCTGAAGGGTGCTTACGAGGACCGCCACTCCGTGAACCTGATCATGGAGCTCTGCGGTGGTGGCGAGCTTTTCGACAGGATCATTACGAAGGGCCACTACTCGGAGCGTGCCGCCGCTAACTTGTGCCGGCAGATCGTGACGGTGGTTCATAACTGTCACACCATGGGAGTGATGCATAGGGACTTGAAGCCTGAGAATTTCTTGTTTCTCAGTAAGGACGAGAGTTCGCCTCTCAAGGCCACAGATTTTGGTCTCTCAGTGTTTTTTAAGCCAGGAGATGTATTTAAAGATCTTGTTGGGAGTGCCTATTATGTTGCTCCTGAGGTGCTGCGTAGAAGTTATGGTCCCGAAGCTGATATTTGGAGTGCTGGTGTTATCTTATACATTCTACTTTCTGGTGTCCCACCCTTCTGGGCAGAAAATGAACAGGGTATCTTTGATGCTATTCTTCGTGGACATATTGATTTCACATCCGATCCTTGGCCTTCCATATCAAGTAGTGCCAAAGATCTAGTCAAGAAGATGCTACGAGCTGACCCTAAGGAACGCCTTTCAGCAGTTGAAGTACTTAATCATCCTTGGATGAGAGTAGATGGAGATGCATCTGATAAGCCGCTTGATATTGCTGTTTTGAGCAGAATGAAACAATTCCGGGCAATGAACAAGCTAAAGAAAGTAGCTCTAAAGGTTATAGCTGAAAATCTTTCTGAAGAGGAAATTATTGGCTTGAAGGAAATGTTCAAATCCATGGATACTGATAATAGTGGAACAATCACTTTTGAAGAGTTGAAAGCTGGTCTCCCCAAACTGGGTAGCAAACTTTCTGAGTCTGAAGTAAGGCAGTTGATGGAGGCGGCCGATGTAGATGGAAATGGAACCATTGATTATATTGAATTTATAACTGCTACCATGCATATGAATAGAATGGAAAGAGAGGATCACCTATATACAGCCTTTGAATATTTTGACAAGGATAAGAGCGGGTACATCACAACGGAAGAGTTGGAATTTGCCCTTAAGAAGTATAATATGGGTGATGAGAAAACAATAAAGGAGATCATTGCCGAAGTTGATACAGACAATGATGCAAAAATTAACTATGATGAGTTTGTAGCCATGATGAGGAAAGGCAACCCAGAAATAACCCACAGACGTCGCAAATAA 1548 0.48 MGNCSSSTSVGGAATYSGEPSHSNGLTVLPPNSNPSPSPPLPRQPLSAAVGRVLGRPMEDVRSIYIFGRELGRGQFGVTYLVTHKVTKEQFACKSIATRKLINRDDIEDIRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMELCGGGELFDRIITKGHYSERAAANLCRQIVTVVHNCHTMGVMHRDLKPENFLFLSKDESSPLKATDFGLSVFFKPGDVFKDLVGSAYYVAPEVLRRSYGPEADIWSAGVILYILLSGVPPFWAENEQGIFDAILRGHIDFTSDPWPSISSSAKDLVKKMLRADPKERLSAVEVLNHPWMRVDGDASDKPLDIAVLSRMKQFRAMNKLKKVALKVIAENLSEEEIIGLKEMFKSMDTDNSGTITFEELKAGLPKLGSKLSESEVRQLMEAADVDGNGTIDYIEFITATMHMNRMEREDHLYTAFEYFDKDKSGYITTEELEFALKKYNMGDEKTIKEIIAEVDTDNDAKINYDEFVAMMRKGNPEITHRRRK 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3786g00046 515 SMART serkin_6 65 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3786g00046 515 SUPERFAMILY Protein kinase-like (PK-like) 65 324 IPR011009 -
Gabi3786g00046 515 Gene3D Transferase(Phosphotransferase) domain 1 152 332 - -
Gabi3786g00046 515 Gene3D Phosphorylase Kinase; domain 1 67 151 - -
Gabi3786g00046 515 Pfam Protein kinase domain 67 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3786g00046 515 FunFam calcium-dependent protein kinase 1 151 330 - -
Gabi3786g00046 515 ProSitePatterns EF-hand calcium-binding domain. 379 391 IPR018247 -
Gabi3786g00046 515 ProSiteProfiles EF-hand calcium-binding domain profile. 402 437 IPR002048 GO:0005509
Gabi3786g00046 515 PANTHER SERINE/THREONINE-PROTEIN KINASE 65 498 - -
Gabi3786g00046 515 ProSitePatterns Protein kinases ATP-binding region signature. 71 94 IPR017441 GO:0005524
Gabi3786g00046 515 MobiDBLite consensus disorder prediction 1 46 - -
Gabi3786g00046 515 MobiDBLite consensus disorder prediction 1 31 - -
Gabi3786g00046 515 ProSitePatterns EF-hand calcium-binding domain. 415 427 IPR018247 -
Gabi3786g00046 515 SUPERFAMILY EF-hand 362 503 IPR011992 -
Gabi3786g00046 515 ProSitePatterns Serine/Threonine protein kinases active-site signature. 185 197 IPR008271 GO:0004672|GO:0006468
Gabi3786g00046 515 FunFam Calcium-dependent protein kinase 1 331 506 - -
Gabi3786g00046 515 SMART efh_1 477 505 IPR002048 GO:0005509
Gabi3786g00046 515 SMART efh_1 442 470 IPR002048 GO:0005509
Gabi3786g00046 515 SMART efh_1 370 398 IPR002048 GO:0005509
Gabi3786g00046 515 SMART efh_1 406 434 IPR002048 GO:0005509
Gabi3786g00046 515 Gene3D - 333 508 - -
Gabi3786g00046 515 ProSitePatterns EF-hand calcium-binding domain. 451 463 IPR018247 -
Gabi3786g00046 515 ProSiteProfiles EF-hand calcium-binding domain profile. 366 401 IPR002048 GO:0005509
Gabi3786g00046 515 ProSiteProfiles EF-hand calcium-binding domain profile. 438 473 IPR002048 GO:0005509
Gabi3786g00046 515 FunFam Calcium-dependent protein kinase 1 67 150 - -
Gabi3786g00046 515 ProSiteProfiles Protein kinase domain profile. 65 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3786g00046 515 Pfam EF-hand domain pair 441 503 IPR002048 GO:0005509
Gabi3786g00046 515 Pfam EF-hand domain pair 371 431 IPR002048 GO:0005509
Gabi3786g00046 515 ProSiteProfiles EF-hand calcium-binding domain profile. 474 508 IPR002048 GO:0005509
Gabi3786g00046 515 CDD STKc_CAMK 65 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3786g00046 Gabi-Chr3786 363071 368131 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3786g00046 51 515 EF-hand Containing Proteins AT4G23650 81.935 0.0 822
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gabi3786g00046 Pkinase 8e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3786g00046 K13412 - gmx:100777096 914.835