Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3786g00045 ATGGGCAACTGCAGCAGCAGCACCAGCGTCGGCGGCGCCGCCACATACTCCGGCGAGCCTTCCCACAGCAACGGTCTCACCGTCCTCCCTCCCAACTCCAATCCCTCACCCTCTCCCCCACTCCCCAGACAACCCCTCTCCGCCGCCGTTGGCCGCGTCCTCGGCCGTCCCATGGAGGACGTTCGTTCCATCTACATCTTCGGCCGCGAACTTGGCCGTGGCCAATTCGGCGTCACCTACTTGGTGACCCACAAAGTGACGAAGGAGCAATTCGCGTGCAAATCAATCGCCACGCGCAAACTGATAAACCGCGACGACATCGAGGACATTCGGCGCGAGGTACAGATCATGCACCACCTCACCGGCCACCGCAACATTGTGGAGCTGAAGGGTGCTTACGAGGACCGCCACTCCGTGAACCTGATCATGGAGCTCTGCGGTGGTGGCGAGCTTTTCGACAGGATCATTACGAAGGGCCACTACTCGGAGCGTGCCGCCGCTAACTTGTGCCGGCAGATCGTGACGGTGGTTCATAACTGTCACACCATGGGAGTGATGCATAGGGACTTGAAGCCTGAGAATTTCTTGTTTCTCAGTAAGGACGAGAGTTCGCCTCTCAAGGCCACAGATTTTGGTCTCTCAGTGGGTTCGATTTTGAGAGCAGGAGATGTATTTAAAGATCTTGTTGGGAGTGCCTATTATGTTGCTCCTGAGGTGCTGCGTAGAAGTTATGGTCCCGAAGCTGATATTTGGAGTGCTGGTGTTATCTTATACATTCTACTTTCTGGTGTCCCACCCTTCTGGGCAGAAAATGAACAGGGTATCTTTGATGCTATTCTTCGTGGACATATTGATTTCACATCCGATCCTTGGCCTTCCATATCAAGTAGTGCCAAAGATCTAGTCAAGAAGATGCTACGAGCTGACCCTAAGGAACGCCTTTCAGCAGTTGAAGTACTTAATCATCCTTGGATGAGAGTAGATGGAGATGCATCTGATAAGCCGCTTGATATTGCTGTTTTGAGCAGAATGAAACAATTCCGGGCAATGAACAAGCTAAAGAAAGTAGCTCTAAAGGTTATAGCTGAAAATCTTTCTGAAGAGGAAATTATTGGCTTGAAGGAAATGTTCAAATCCATGGATACTGATAATAGTGGAACAATCACTTTTGAAGAGTTGAAAGCTGGTCTCCCCAAACTGGGTAGCAAACTTTCTGAGTCTGAAGTAAGGCAGTTGATGGAGGCGGCCGATGTAGATGGAAATGGAACCATTGATTATATTGAATTTATAACTGCTACCATGCATATGAATAGAATGGAAAGAGAGGATCACCTATATACAGCCTTTGAATATTTTGACAAGGATAAGAGCGGGTACATCACAACGGAAGAGTTGGAATTTGCCCTTAAGAAGTATAATATGGGTGATGAGAAAACAATAAAGGAGATCATTGCCGAAGTTGATACAGACAATGATGCAAAAATTAACTATGATGAGTTTGTAGCCATGATGAGGAAAGGCAACCCAGAAATAACCCACAGACGTCGCAAATAA 1554 0.4813 MGNCSSSTSVGGAATYSGEPSHSNGLTVLPPNSNPSPSPPLPRQPLSAAVGRVLGRPMEDVRSIYIFGRELGRGQFGVTYLVTHKVTKEQFACKSIATRKLINRDDIEDIRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMELCGGGELFDRIITKGHYSERAAANLCRQIVTVVHNCHTMGVMHRDLKPENFLFLSKDESSPLKATDFGLSVGSILRAGDVFKDLVGSAYYVAPEVLRRSYGPEADIWSAGVILYILLSGVPPFWAENEQGIFDAILRGHIDFTSDPWPSISSSAKDLVKKMLRADPKERLSAVEVLNHPWMRVDGDASDKPLDIAVLSRMKQFRAMNKLKKVALKVIAENLSEEEIIGLKEMFKSMDTDNSGTITFEELKAGLPKLGSKLSESEVRQLMEAADVDGNGTIDYIEFITATMHMNRMEREDHLYTAFEYFDKDKSGYITTEELEFALKKYNMGDEKTIKEIIAEVDTDNDAKINYDEFVAMMRKGNPEITHRRRK 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3786g00045 517 FunFam Calcium-dependent protein kinase 1 67 150 - -
Gabi3786g00045 517 ProSitePatterns EF-hand calcium-binding domain. 381 393 IPR018247 -
Gabi3786g00045 517 FunFam calcium-dependent protein kinase 1 151 332 - -
Gabi3786g00045 517 Gene3D Phosphorylase Kinase; domain 1 67 151 - -
Gabi3786g00045 517 ProSiteProfiles Protein kinase domain profile. 65 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3786g00045 517 Pfam Protein kinase domain 67 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3786g00045 517 ProSiteProfiles EF-hand calcium-binding domain profile. 368 403 IPR002048 GO:0005509
Gabi3786g00045 517 ProSitePatterns Protein kinases ATP-binding region signature. 71 94 IPR017441 GO:0005524
Gabi3786g00045 517 MobiDBLite consensus disorder prediction 1 46 - -
Gabi3786g00045 517 MobiDBLite consensus disorder prediction 1 31 - -
Gabi3786g00045 517 ProSiteProfiles EF-hand calcium-binding domain profile. 404 439 IPR002048 GO:0005509
Gabi3786g00045 517 SMART efh_1 408 436 IPR002048 GO:0005509
Gabi3786g00045 517 SMART efh_1 444 472 IPR002048 GO:0005509
Gabi3786g00045 517 SMART efh_1 479 507 IPR002048 GO:0005509
Gabi3786g00045 517 SMART efh_1 372 400 IPR002048 GO:0005509
Gabi3786g00045 517 SUPERFAMILY EF-hand 364 505 IPR011992 -
Gabi3786g00045 517 ProSitePatterns Serine/Threonine protein kinases active-site signature. 185 197 IPR008271 GO:0004672|GO:0006468
Gabi3786g00045 517 SUPERFAMILY Protein kinase-like (PK-like) 65 326 IPR011009 -
Gabi3786g00045 517 CDD STKc_CAMK 65 324 - -
Gabi3786g00045 517 PANTHER SERINE/THREONINE-PROTEIN KINASE 65 500 - -
Gabi3786g00045 517 ProSitePatterns EF-hand calcium-binding domain. 453 465 IPR018247 -
Gabi3786g00045 517 ProSiteProfiles EF-hand calcium-binding domain profile. 440 475 IPR002048 GO:0005509
Gabi3786g00045 517 Pfam EF-hand domain pair 373 433 IPR002048 GO:0005509
Gabi3786g00045 517 Pfam EF-hand domain pair 443 505 IPR002048 GO:0005509
Gabi3786g00045 517 ProSiteProfiles EF-hand calcium-binding domain profile. 476 510 IPR002048 GO:0005509
Gabi3786g00045 517 Gene3D - 335 510 - -
Gabi3786g00045 517 FunFam Calcium-dependent protein kinase 1 333 508 - -
Gabi3786g00045 517 Gene3D Transferase(Phosphotransferase) domain 1 152 334 - -
Gabi3786g00045 517 ProSitePatterns EF-hand calcium-binding domain. 417 429 IPR018247 -
Gabi3786g00045 517 SMART serkin_6 65 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3786g00045 Gabi-Chr3786 363071 368131 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3786g00045 51 517 EF-hand Containing Proteins AT4G23650 80.728 0.0 809
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gabi3786g00045 Pkinase 6.7e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3786g00045 K13412 - gmx:100777096 900.968