Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3786g00042 ATGGAACAGAAAAGCTTTCTGATATCGGCGGTGAGTGTTGGGGTGGGGGTGGGAGTGGGAGTGGGGATTGGATTGGCTTCAGGACAAAGCGTTGGAAAATGGGGAGCAAATAGTCGTTCATCAAACGCCATTAATGCTGAGAAGATGGAGCAGGAAATGCTTCGACAAGTTATTGATGGAAGAGAAAGCAACATCACTTTTGATAAATTCCCTTATTACCTCAGTGAGCAGACACGGGTTTTGCTGACAAGTGCTGCTTATGTCCATTTGAAGCATGCTGAGGTTTCTAAATATACACGTAATCTTGCTCCTGCAAGCCAGACTATTCTGCTTTCAGGGCCAGCAGAACTTTACCAACAGATGCTTGCCAAGGCTTTGGCTCATTACTTTGAGGCGAAGTTGCTTTTGTTAGATTTAACTGACTTTTCATTGAAGATTCAGAGTAGATATGGTTCTGCCAACAAAGAATCTTCTTTCAAAAGATCCACTTCAGAGTCAACTTTGGAGCGGCTATCTGAACTATTTGGGTCATTTTCAATCTTTCCACAGAGGGAGCAACCTAAAGGCAAAATGCACAGGCAAAGCAGTGGACTGGACCTCCAATCAATGGGGGCTGAAGCATCTTGTAATCCTCCAAAGCTCCGTAGGAATGCTGCTTCCACTTCAAACATTAGTGGCCTTGCTTTGCAAAGCAATCCTTCAAATTCAGCTCCTCTGAAGCGCACAACCAGCTGGTCTTTTGACGAAAAGCTTCTTATACAGTCTCTTTACAAGGTTCTGGTTTTTGTGTCAAAAACCCATCCCATTGTGCTATATCTGCGGGATGTTGATAAGTTGTTATATAGATCACAAAGGATATATAACTTGTTCCAGAATATGTTAAAGAAATTATCTGGAGGACCAATTTTGATTCTTGGCTCACGAGTCTTAGATTCTGGAAATGACTACGAAGAGGTGGATGAGAGACTTACTTTGCTCTTCCCATACAACATAGAAATCAGGCCTCCAGAAGACGAATCACATCTTGTCAGCTGGAAGTCTCAATTGGAAGAGGATATGAAGAAGATACAAGCTCAGGATAACAAGAACCATATCACGGAAGTGCTTGCAGCCAATGATCTTGATTGTGATGACCTGGATTCCATCTGTGTGGAAGACACAATGGTTCTCAGTAACTACATAGAAGAGATTATGGTGTCAGCAATATCTAATCATTTGATGAAAAACAAAGACCTTGAATACAGAAATGGGAAACTCGTTATTTCTTGTAATAGTTTATCCCATGCATTGGGTATATTCCACAAGGGGAAATTCAGTGGAAGAGGTACATCAAAATTGGAAGACCAAGCCGTAAAATCTGAGATGCAAGGAAAGGAAGGAACAGTTATGAAACCAGAAGCGAAGTCTGAAAATGCTGCTCCTGTAAAAAAGGTTGAAGCGGAAGTATCAACTTCAGTGAGAAAGGCAGACGGTGAAAATTCAGTTCCTACATCCAAAGCTGCTGAAGTTCCTCCTGATAATGAGTTTGAGAAGCGAATAAGGCCTGAGGTAATACCAGCAAATGAGATTAATGTTTCATTCTCTGATATTGGTGCCTTAGATGAGACCAAAGAATCCCTTCAAGAACTAGTAATGCTTCCTCTTCGAAGGCCGGACCTTTTCACTGGAGGCCTTCTAAAGCCTTGTAGAGGAATATTGCTATTTGGACCTCCAGGCACTGGGAAGACAATGCTGGCAAAGGCCATTGCAAAGGAGGCTGGAGCAAGTTTCATCAATGTGTCCATGTCTACCATCACTTCTAAATGGTTTGGTGAAGATGAGAAGAATGTTCGTGCTTTATTCACACTTGCAGCCAAGGTCTCCCCAACTATTATATTTGTGGATGAGGTTGACAGCATGCTTGGGCAGCGAACCAGAGTTGGGGAGCATGAAGCCATGCGGAAAATAAAGAATGAATTCATGACCCACTGGGATGGACTTCTCACCAAACCTGGGGAGCGCATCCTTGTTCTTGCTGCAACCAATAGGCCATTTGACCTCGATGAAGCCATTATTAGGCGATTTGAAAGGAGAATTATGGTAGGACTACCATCTGTGGAGAACAGGGAAAAGATATTGAGGACTCTTTTGTCAAAAGAAAAGGTGGACAATGAACTTGATTTTAAGGAACTCGCAACTATGACAGAAGGATATACTGGAAGTGATCTAAAGAACTTGTGCACAACTGCTGCTTATCGACCTGTTAGAGAGCTAATTCAGCAAGAGAGACTAAAGAATCTGGATAAAAAGCAGAAAGCTGCCAAGGGACAGAATAAAGATGATGCTCTGGATGCAGAAAAGGAAGTTAAACAGGAAAGAGTTATCACCCTTAGGCCATTGAATATGCAGGATTTCAAAGAGGCCAAGAGTCAGGTTGCTGCAAGTTTTTCAGCTGAGGGAGCTGGAATGAGCGAGTTGAAGCAGTGGAACGAGTTGTATGGAGAAGGGGGTTCAAGGAAGCAACAGCAATTGTCTTACTTCCTATAA 2526 0.426 MEQKSFLISAVSVGVGVGVGVGIGLASGQSVGKWGANSRSSNAINAEKMEQEMLRQVIDGRESNITFDKFPYYLSEQTRVLLTSAAYVHLKHAEVSKYTRNLAPASQTILLSGPAELYQQMLAKALAHYFEAKLLLLDLTDFSLKIQSRYGSANKESSFKRSTSESTLERLSELFGSFSIFPQREQPKGKMHRQSSGLDLQSMGAEASCNPPKLRRNAASTSNISGLALQSNPSNSAPLKRTTSWSFDEKLLIQSLYKVLVFVSKTHPIVLYLRDVDKLLYRSQRIYNLFQNMLKKLSGGPILILGSRVLDSGNDYEEVDERLTLLFPYNIEIRPPEDESHLVSWKSQLEEDMKKIQAQDNKNHITEVLAANDLDCDDLDSICVEDTMVLSNYIEEIMVSAISNHLMKNKDLEYRNGKLVISCNSLSHALGIFHKGKFSGRGTSKLEDQAVKSEMQGKEGTVMKPEAKSENAAPVKKVEAEVSTSVRKADGENSVPTSKAAEVPPDNEFEKRIRPEVIPANEINVSFSDIGALDETKESLQELVMLPLRRPDLFTGGLLKPCRGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTKPGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSVENREKILRTLLSKEKVDNELDFKELATMTEGYTGSDLKNLCTTAAYRPVRELIQQERLKNLDKKQKAAKGQNKDDALDAEKEVKQERVITLRPLNMQDFKEAKSQVAASFSAEGAGMSELKQWNELYGEGGSRKQQQLSYFL 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3786g00042 841 Gene3D - 697 803 - -
Gabi3786g00042 841 MobiDBLite consensus disorder prediction 444 505 - -
Gabi3786g00042 841 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 524 699 - -
Gabi3786g00042 841 ProSitePatterns AAA-protein family signature. 668 687 IPR003960 GO:0005524|GO:0016887
Gabi3786g00042 841 Pfam AAA+ lid domain 719 760 IPR041569 -
Gabi3786g00042 841 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 104 383 IPR027417 -
Gabi3786g00042 841 Gene3D - 524 812 IPR027417 -
Gabi3786g00042 841 SMART AAA_5 561 698 IPR003593 GO:0016887
Gabi3786g00042 841 Pfam ATPase family associated with various cellular activities (AAA) 565 695 IPR003959 GO:0005524|GO:0016887
Gabi3786g00042 841 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 525 803 IPR027417 -
Gabi3786g00042 841 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 47 840 - -
Gabi3786g00042 841 MobiDBLite consensus disorder prediction 447 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3786g00042 Gabi-Chr3786 331052 336480 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3786g00042 525 757 Calmodulin-binding Proteins AT3G56690 38.559 1.69e-43 168