Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3786g00006 ATGGGTCACCATTCTTGCTGCAACCAACAGAAAGTTAAGAGAGGGCTTTGGTCCCCTGAGGAAGATGAGAAACTCATCAGATACATTACCACTCATGGCTATGGCTGTTGGAGTGAAGTTCCAGAGAAAGCTGGGCTTCTAAGGTGTGGCAAGAGTTGTCGTTTGAGATGGATTAATTATTTGAGACCTGATATTAGAAGAGGCAGGTTTACACCTGAGGAGGAGAAACTAATTATAAGCCTTCATGGGGTCGTAGGCAACAGATGGGCTCATATTGCAAGCCACTTGCCTGGTAGAACTGACAATGAAATAAAGAACTATTGGAATTCTTGGATCAAAAAGAAAATAAGAAAGCCTTCAGTGTCTTCAACAACCATTGCACAAAGAGTCGATCAATCCCAGTTCAATTATAATTCCAATCAACTAGGTCACTTTGCCAGCCAAGATAATCATCTAACAGCAAAAACATCAGTGGAAGAAACCTTATTTTCTTCCACATGGCCCTTGTTTATGTTTGAAACTATTTCACTTGATGGGACTTCAACAAATAGCAATGTACGAGTAGAACACTTCCAAGTCGATGCAGTGGGTTTGAACTCTGAACCATGGAACTTGAGCCACCATCAAGTCCAGGCACTTCCTCCTTCATCAGCAACAACTTTTGCATTGGGTGTAGGTTTGGACACCACGAATTATCTACCACCATTGATAGAGAACGTGCAAAGCATGGTGCCAATTGAAGCACAATCTTGTAATATGGACGAGGAAGGAGATATACCTCTTGAGTGCTTGCAGAGGCAAGAGTTAAATGAATGGGTTGAAACCCAACAACAATGTTCTAACTTTGTTTTTTGGGACAACGTTGAAGCAGAACTTGGTGGGGAAGAACTAGCACCAAATTCATCAAATATGGGAGCAAATACACTTTCTCCTTTTCCTTCGTCTTTGGATCCAATCGAGTTTCTTTTGCATTGTTTTTGTCTATTTGTTCAGATCATTACGGAGAAGAACCGTAGGGAGATCTGCAAATACTTGTTCCAAGAGGGGGTTTGCTTTGCAAAGAAGGATTTCAATTTGGCAAAGCACCCAGAGATTGATGTGCCAAATCTACAAGTGATTAAGCTGATGCAAAGCTTCAAATCGAGAGAGTACGTGAGGGAGACATTTGCTTGGATGCACTATTACTGGTTCCTTACCAATGATGGCATTGAGTTCCTCAGAACGTACCTTAATCTTCCTTCAGAAATCGTCCCTGCTACTTTGAAGAAACAAGCCAAGCCACCTGGTAGACCGTTTGGTGGACCACCCGGTGATCGCCCAAGGGGTCCACCACGTTTTGAAGGGGAACGTAGATTTGGTGACCGTGATGGATACCGTGGAGGTCCCCGAGGACCTGGTGGTGACTTTGGAGGAGACAAGGGAGGAGCTCCTGCTGATTACAGGCCTTCTTTTGGGGGTTCTGGCGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGGGCTCCAACCAGCTCAAATCTTGCTTAA 1530 0.4418 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLLRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKPSVSSTTIAQRVDQSQFNYNSNQLGHFASQDNHLTAKTSVEETLFSSTWPLFMFETISLDGTSTNSNVRVEHFQVDAVGLNSEPWNLSHHQVQALPPSSATTFALGVGLDTTNYLPPLIENVQSMVPIEAQSCNMDEEGDIPLECLQRQELNEWVETQQQCSNFVFWDNVEAELGGEELAPNSSNMGANTLSPFPSSLDPIEFLLHCFCLFVQIITEKNRREICKYLFQEGVCFAKKDFNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWFLTNDGIEFLRTYLNLPSEIVPATLKKQAKPPGRPFGGPPGDRPRGPPRFEGERRFGDRDGYRGGPRGPGGDFGGDKGGAPADYRPSFGGSGGRPGFGRGSGGFGAPTSSNLA 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3786g00006 509 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gabi3786g00006 509 FunFam 40S ribosomal protein S10 331 434 - -
Gabi3786g00006 509 CDD SANT 69 112 IPR001005 -
Gabi3786g00006 509 FunFam Transcription factor MYB26 68 137 - -
Gabi3786g00006 509 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gabi3786g00006 509 PANTHER MYB DOMAIN PROTEIN 55 1 267 - -
Gabi3786g00006 509 MobiDBLite consensus disorder prediction 421 509 - -
Gabi3786g00006 509 Gene3D - 6 66 - -
Gabi3786g00006 509 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gabi3786g00006 509 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Gabi3786g00006 509 Pfam Plectin/S10 domain 333 424 IPR005326 -
Gabi3786g00006 509 CDD SANT 17 61 IPR001005 -
Gabi3786g00006 509 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gabi3786g00006 509 FunFam MYB transcription factor 6 66 - -
Gabi3786g00006 509 SMART sant 66 114 IPR001005 -
Gabi3786g00006 509 SMART sant 13 63 IPR001005 -
Gabi3786g00006 509 MobiDBLite consensus disorder prediction 442 458 - -
Gabi3786g00006 509 Gene3D - 332 434 IPR036388 -
Gabi3786g00006 509 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gabi3786g00006 509 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Gabi3786g00006 509 Gene3D - 69 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3786g00006 Gabi-Chr3786 77314 83874 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3786g00006 1 305 MYB Transcription Factor Family AT1G63910 50.000 3.44e-97 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi3786g00006 S10_plectin 4.9e-42 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3786g00006 K09422 K02947 gmx:100803556 712.605