Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3782g00002 ATGGATATGAGAGACCAAGTTAAGGAACTAGAGATGCCAACCACAGTGGGTTATAATCTCCCTAACAGGGTTTCCTCTTCTTCCAAGCTATCTTCTTCAACTCTAGGGGAAAGAAGTGATCAAACTCCTCAAACTCACACATTAATTTTCAGTGATCCACCTCAAACTGCTCATCATAGTCATCTTTCTCCCCCTTTTCTTCCTCCAAACCCAATTCAACTCCAACAACCAATCAGACCCAGAAGAGATCCAGATCCAAATTCTTCTTATCCTATTGCCACCACAAGCAGAACAAGCACCCCAATTGCTAGTGGATCAAACCCCACAAGAACAGAAACACCACCACCACAACCACCACTACCACAGACAGCAAGAACAAGAACAAGAACAACAACAACATCTATTAGATACCGAGAATGTCTGAAGAATCATGCAGCTAGCATGGGGGGTCATGTTATAGATGGATGTGGCGAGTTCATGCCAAGCGGAGAAGATGGAACCCCAGAATCCATGAAATGTGCTGCTTGTGATTGCCACCGCAATTTTCACAGAAAAGAAGCTGAAGGAGAACCACAACATGTTCTCAACTATCACAGCTATTATTACAACAAAAGCAACGGTCAGAATAGGATTCATTCTCTTCTTCATCATCATAGACTTTCTTCACATGGGGTTGCCACCACTTCAGCAGGGCTGATTCAGCCGATGACGGTGGCCGTTGGTGGAAGCGGTGGAGGCCCAGCTGAGTCCTCTAGTGAAGATCTCAACATGTTTCAGTGTAATGATGGAGTTCAATTATCAGTGCAGCAGCCACCACTATCAAAAAAGAGGTTCAGGACAAAGTTCACCCAGCAACAAAAGGAAAGGATGATGGAATTGGCTGAGAAACTTGGGTGGAAGATCCAGAAACAAGATGAGCATGAAGTACAACAAATTTGTTCTCAACTTGGTGTAAAAAGACAAGTTTTCAAGATTTGGATGCACAATAGCAAGCAAGCCATGAAGAAGAAGCAAATGTAA 1020 0.4353 MDMRDQVKELEMPTTVGYNLPNRVSSSSKLSSSTLGERSDQTPQTHTLIFSDPPQTAHHSHLSPPFLPPNPIQLQQPIRPRRDPDPNSSYPIATTSRTSTPIASGSNPTRTETPPPQPPLPQTARTRTRTTTTSIRYRECLKNHAASMGGHVIDGCGEFMPSGEDGTPESMKCAACDCHRNFHRKEAEGEPQHVLNYHSYYYNKSNGQNRIHSLLHHHRLSSHGVATTSAGLIQPMTVAVGGSGGGPAESSSEDLNMFQCNDGVQLSVQQPPLSKKRFRTKFTQQQKERMMELAEKLGWKIQKQDEHEVQQICSQLGVKRQVFKIWMHNSKQAMKKKQM 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3782g00002 339 ProSiteProfiles 'Homeobox' domain profile. 273 337 IPR001356 GO:0003677
Gabi3782g00002 339 NCBIfam homeobox domain, ZF-HD class 275 332 IPR006455 -
Gabi3782g00002 339 MobiDBLite consensus disorder prediction 1 132 - -
Gabi3782g00002 339 MobiDBLite consensus disorder prediction 18 58 - -
Gabi3782g00002 339 FunFam Zinc-finger homeodomain protein 2 263 336 - -
Gabi3782g00002 339 MobiDBLite consensus disorder prediction 88 110 - -
Gabi3782g00002 339 SUPERFAMILY Homeodomain-like 269 336 IPR009057 -
Gabi3782g00002 339 Gene3D - 264 336 - -
Gabi3782g00002 339 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 136 186 IPR006456 -
Gabi3782g00002 339 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 137 186 IPR006456 -
Gabi3782g00002 339 Pfam ZF-HD protein dimerisation region 135 187 IPR006456 -
Gabi3782g00002 339 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 113 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3782g00002 Gabi-Chr3782 61263 62325 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3782g00002 106 339 ZF-HD Transcription Factor Family AT2G18350 46.809 1.99e-67 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gabi3782g00002 ZF-HD_dimer 5.2e-31 No_clan